This platform represents an effort to synchronize phenotypic information for microbes. We have applied and collected various models, primarily Large Language Model (LLM) based, to predict phenotypes and compare these predictions to high-quality phenotypes documented in scientific literature or phenotyping studies. For each microbe, we've generated a "card" page that collects this information and illustrates how the predictions overlap with ground truth. Additionally, we provide model performance estimates for widely used public LLM models based on these high-quality data. Use the search functionality below to explore these microbe cards and compare predictions with documented phenotypes.
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Kosakonia oryziphila is a fascinating bacterium primarily known for its association with rice plants, where it plays a significant role in promoting plant growth and health. This organism is particularly interesting due to its ability to fix nitrogen, a process that converts atmospheric nitrogen into a form that plants can utilize. This characteristic makes K. oryziphila valuable in sustainable agriculture, as it can enhance soil fertility and reduce the need for chemical fertilizers. One of the unique aspects of K. oryziphila is its capacity to form symbiotic relationships with various plant species, not just rice. This adaptability suggests a potential for broader applications in agricultural practices across different crops. The bacterium has also been studied for its ability to produce plant hormones, such as auxins, which can stimulate root development and improve nutrient uptake. Furthermore, K. oryziphila has garnered attention in the field of microbiome research, particularly in understanding the interactions between soil microbes and plant health. Its presence in the rhizosphere can influence the microbial community structure, which is crucial for plant resilience against pathogens and environmental stressors. In summary, Kosakonia oryziphila stands out not only for its nitrogen-fixing capabilities but also for its role in enhancing plant growth and health, making it a significant organism in both ecological and agricultural research.
| Phenotype | Status |
|---|---|
| Motility | Literature-based |
| Gram staining | Literature-based |
| Aerophilicity | Literature-based |
| Extreme environment tole… | Literature-based |
| Biofilm formation | LLM-based |
| Animal pathogenicity | LLM-based |
| Biosafety level | Literature-based |
| Health association | LLM-based |
| Host association | Literature-based |
| Plant pathogenicity | LLM-based |
| Spore formation | Literature-based |
| Hemolysis | LLM-based |
| Cell shape | Literature-based |