This platform represents an effort to synchronize phenotypic information for microbes. We have applied and collected various models, primarily Large Language Model (LLM) based, to predict phenotypes and compare these predictions to high-quality phenotypes documented in scientific literature or phenotyping studies. For each microbe, we've generated a "card" page that collects this information and illustrates how the predictions overlap with ground truth. Additionally, we provide model performance estimates for widely used public LLM models based on these high-quality data. Use the search functionality below to explore these microbe cards and compare predictions with documented phenotypes.
19163
3884
Pseudomonas wadenswilerensis is a fascinating bacterium that was first isolated from a soil sample in Wädenswil, Switzerland. This species is part of the diverse genus Pseudomonas, known for its metabolic versatility and ability to thrive in various environments. One of the most interesting aspects of P. wadenswilerensis is its potential for bioremediation, as it has shown the ability to degrade a range of environmental pollutants, including hydrocarbons and other organic compounds. This characteristic makes it a valuable organism for research in environmental microbiology and biotechnology, particularly in efforts to clean up contaminated sites. Additionally, P. wadenswilerensis exhibits unique enzymatic capabilities that allow it to utilize various carbon sources, which can be harnessed for industrial applications. Its adaptability to different ecological niches highlights the evolutionary success of the Pseudomonas genus, making it a subject of interest for studies on microbial ecology and evolution. Furthermore, the genomic analysis of P. wadenswilerensis has revealed insights into its metabolic pathways and regulatory mechanisms, providing a deeper understanding of how this organism interacts with its environment. This knowledge can contribute to the development of novel biotechnological applications, such as biofertilizers or biocontrol agents in agriculture. In summary, Pseudomonas wadenswilerensis stands out due to its bioremediation potential, metabolic versatility, and genomic insights, making it a significant organism for both environmental and industrial research.
| Phenotype | Status |
|---|---|
| Motility | Literature-based |
| Gram staining | Literature-based |
| Aerophilicity | Literature-based |
| Extreme environment tole… | Literature-based |
| Biofilm formation | LLM-based |
| Animal pathogenicity | Literature-based |
| Biosafety level | Literature-based |
| Health association | LLM-based |
| Host association | LLM-based |
| Plant pathogenicity | Literature-based |
| Spore formation | Literature-based |
| Hemolysis | LLM-based |
| Cell shape | Literature-based |