This platform represents an effort to synchronize phenotypic information for microbes. We have applied and collected various models, primarily Large Language Model (LLM) based, to predict phenotypes and compare these predictions to high-quality phenotypes documented in scientific literature or phenotyping studies. For each microbe, we've generated a "card" page that collects this information and illustrates how the predictions overlap with ground truth. Additionally, we provide model performance estimates for widely used public LLM models based on these high-quality data. Use the search functionality below to explore these microbe cards and compare predictions with documented phenotypes.
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Proteus alimentorum is a fascinating bacterium that belongs to the family Enterobacteriaceae. This organism is particularly interesting due to its ability to thrive in diverse environments, including the gastrointestinal tracts of various animals and humans. One of the most notable characteristics of P. alimentorum is its role in the degradation of complex organic materials, which contributes to nutrient cycling in ecosystems. This capability makes it valuable for research in environmental microbiology and bioremediation efforts. Another unique aspect of P. alimentorum is its metabolic versatility. It can utilize a wide range of substrates, which allows it to adapt to different ecological niches. This adaptability is a subject of interest for studies on microbial ecology and evolution, as it provides insights into how microorganisms can survive and flourish in changing environments. Furthermore, P. alimentorum has been studied for its potential applications in biotechnology. Its enzymatic activities, particularly in the breakdown of polysaccharides and proteins, could be harnessed for industrial processes, such as waste treatment and the production of biofuels. The exploration of these applications highlights the organism's significance in both ecological and industrial contexts. In summary, Proteus alimentorum stands out due to its ecological versatility, metabolic capabilities, and potential biotechnological applications, making it a valuable subject for ongoing research in microbiology and environmental science.
| Phenotype | Status |
|---|---|
| Motility | Literature-based |
| Gram staining | Literature-based |
| Aerophilicity | Literature-based |
| Extreme environment tole… | Literature-based |
| Biofilm formation | LLM-based |
| Animal pathogenicity | LLM-based |
| Biosafety level | Literature-based |
| Health association | LLM-based |
| Host association | Literature-based |
| Plant pathogenicity | Literature-based |
| Spore formation | Literature-based |
| Hemolysis | LLM-based |
| Cell shape | Literature-based |