This platform represents an effort to synchronize phenotypic information for microbes. We have applied and collected various models, primarily Large Language Model (LLM) based, to predict phenotypes and compare these predictions to high-quality phenotypes documented in scientific literature or phenotyping studies. For each microbe, we've generated a "card" page that collects this information and illustrates how the predictions overlap with ground truth. Additionally, we provide model performance estimates for widely used public LLM models based on these high-quality data. Use the search functionality below to explore these microbe cards and compare predictions with documented phenotypes.
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Gordonia oryzae is a fascinating actinobacterial species that has garnered attention due to its unique metabolic capabilities and ecological significance. This microorganism is particularly interesting because it is known for its ability to degrade a variety of complex organic compounds, including those found in agricultural waste. This characteristic positions G. oryzae as a potential candidate for bioremediation applications, where it could be utilized to clean up contaminated environments, especially those affected by agricultural runoff. One of the standout features of G. oryzae is its capacity to metabolize aromatic compounds, which are often resistant to degradation. This ability not only highlights the organism's versatility but also its potential role in the bioconversion of waste materials into valuable products. Researchers are particularly interested in the enzymatic pathways employed by G. oryzae for the breakdown of these compounds, as understanding these mechanisms could lead to advancements in biotechnology and environmental science. Additionally, G. oryzae has been isolated from various ecological niches, including soil and plant rhizospheres, indicating its adaptability and potential symbiotic relationships with plants. This aspect opens avenues for exploring its role in promoting plant health and growth, making it a valuable organism in agricultural research. In summary, the unique metabolic capabilities of Gordonia oryzae, particularly its ability to degrade complex organic pollutants, along with its ecological versatility, make it a significant subject of study in both environmental and agricultural sciences. Its potential applications in bioremediation and plant health enhancement underscore its value in ongoing research efforts.
| Phenotype | Status |
|---|---|
| Motility | Literature-based |
| Gram staining | Literature-based |
| Aerophilicity | Literature-based |
| Extreme environment tole… | Literature-based |
| Biofilm formation | LLM-based |
| Animal pathogenicity | Literature-based |
| Biosafety level | Literature-based |
| Health association | LLM-based |
| Host association | Literature-based |
| Plant pathogenicity | Literature-based |
| Spore formation | Literature-based |
| Hemolysis | LLM-based |
| Cell shape | Literature-based |