This platform represents an effort to synchronize phenotypic information for microbes. We have applied and collected various models, primarily Large Language Model (LLM) based, to predict phenotypes and compare these predictions to high-quality phenotypes documented in scientific literature or phenotyping studies. For each microbe, we've generated a "card" page that collects this information and illustrates how the predictions overlap with ground truth. Additionally, we provide model performance estimates for widely used public LLM models based on these high-quality data. Use the search functionality below to explore these microbe cards and compare predictions with documented phenotypes.
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Mycolicibacterium komossense is a fascinating species within the genus Mycolicibacterium, which is known for its unique lipid composition and ecological versatility. This organism is particularly interesting due to its ability to produce mycolic acids, which are long-chain fatty acids that play a crucial role in the structural integrity of the cell wall. These mycolic acids contribute to the organism's resistance to environmental stressors, making it a subject of interest in studies related to microbial survival in harsh conditions. One of the unique aspects of M. komossense is its potential for biotechnological applications. The organism has been explored for its ability to degrade complex organic compounds, which could be valuable in bioremediation efforts. This capability positions M. komossense as a potential candidate for use in the treatment of contaminated environments, particularly in the breakdown of pollutants that are resistant to conventional degradation processes. Additionally, M. komossense has been isolated from various environmental sources, indicating its adaptability and ecological significance. Its presence in diverse habitats suggests that it may play a role in nutrient cycling and ecosystem functioning. The study of this microorganism can provide insights into microbial interactions within its environment and contribute to our understanding of microbial ecology. Overall, the unique characteristics of Mycolicibacterium komossense, particularly its lipid composition and potential biotechnological applications, make it a valuable organism for research in microbiology, ecology, and environmental science.
| Phenotype | Status |
|---|---|
| Motility | Literature-based |
| Gram staining | Literature-based |
| Aerophilicity | Literature-based |
| Extreme environment tole… | LLM-based |
| Biofilm formation | LLM-based |
| Animal pathogenicity | LLM-based |
| Biosafety level | Literature-based |
| Health association | LLM-based |
| Host association | Literature-based |
| Plant pathogenicity | Literature-based |
| Spore formation | Literature-based |
| Hemolysis | Missing |
| Cell shape | Literature-based |