This platform represents an effort to synchronize phenotypic information for microbes. We have applied and collected various models, primarily Large Language Model (LLM) based, to predict phenotypes and compare these predictions to high-quality phenotypes documented in scientific literature or phenotyping studies. For each microbe, we've generated a "card" page that collects this information and illustrates how the predictions overlap with ground truth. Additionally, we provide model performance estimates for widely used public LLM models based on these high-quality data. Use the search functionality below to explore these microbe cards and compare predictions with documented phenotypes.
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Vibrio xuii is a fascinating marine bacterium that has garnered attention due to its unique ecological niche and potential applications in biotechnology. This organism is primarily found in coastal waters and is known for its ability to thrive in environments with varying salinity levels, making it an excellent model for studying osmoregulation and adaptation mechanisms in marine microorganisms. One of the most interesting aspects of Vibrio xuii is its production of bioactive compounds, which have shown promise in pharmaceutical applications. These compounds can exhibit antimicrobial properties, providing a potential source for new antibiotics in an era of increasing antibiotic resistance. The metabolic pathways involved in the synthesis of these compounds are a subject of ongoing research, as understanding these pathways could lead to the development of novel therapeutic agents. Additionally, Vibrio xuii has been studied for its role in the marine ecosystem, particularly in nutrient cycling and its interactions with other marine organisms. Its ability to degrade complex organic materials contributes to the overall health of marine environments, making it a key player in ecological studies. Furthermore, the organism's genetic makeup has been explored for insights into horizontal gene transfer, which is crucial for understanding the evolution of pathogenic traits in related species. This aspect of Vibrio xuii is particularly valuable for researchers investigating the dynamics of microbial communities and the spread of virulence factors in aquatic environments. In summary, Vibrio xuii stands out not only for its ecological significance but also for its potential contributions to biotechnology and medicine, making it a valuable subject for ongoing research.
| Phenotype | Status |
|---|---|
| Motility | Literature-based |
| Gram staining | Literature-based |
| Aerophilicity | Literature-based |
| Extreme environment tole… | Literature-based |
| Biofilm formation | LLM-based |
| Animal pathogenicity | Literature-based |
| Biosafety level | Literature-based |
| Health association | LLM-based |
| Host association | Literature-based |
| Plant pathogenicity | Literature-based |
| Spore formation | Literature-based |
| Hemolysis | LLM-based |
| Cell shape | Literature-based |