This platform represents an effort to synchronize phenotypic information for microbes. We have applied and collected various models, primarily Large Language Model (LLM) based, to predict phenotypes and compare these predictions to high-quality phenotypes documented in scientific literature or phenotyping studies. For each microbe, we've generated a "card" page that collects this information and illustrates how the predictions overlap with ground truth. Additionally, we provide model performance estimates for widely used public LLM models based on these high-quality data. Use the search functionality below to explore these microbe cards and compare predictions with documented phenotypes.
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Enterococcus termitis is a fascinating species of bacteria that has garnered attention due to its unique ecological niche and potential applications in biotechnology. This organism is primarily associated with termites, where it plays a crucial role in the digestion of cellulose, a major component of the wood that termites consume. The symbiotic relationship between E. termitis and its termite hosts is a prime example of mutualism, as the bacteria help break down complex carbohydrates, allowing termites to extract nutrients from otherwise indigestible materials. One of the most interesting aspects of E. termitis is its ability to thrive in the anaerobic conditions of the termite gut, where it contributes to the fermentation process. This capability not only aids in the digestion of cellulose but also produces short-chain fatty acids, which are beneficial for the host's energy metabolism. The metabolic pathways utilized by E. termitis are of significant interest for researchers studying gut microbiomes and their impact on host health. Furthermore, E. termitis has been identified as a potential candidate for biotechnological applications, particularly in the field of biofuel production. By harnessing its cellulose-degrading capabilities, scientists are exploring ways to utilize this bacterium in the conversion of lignocellulosic biomass into fermentable sugars, which can then be transformed into biofuels. This not only highlights the organism's ecological importance but also its potential value in sustainable energy solutions. In summary, Enterococcus termitis stands out due to its symbiotic relationship with termites, its role in cellulose digestion, and its promising applications in biotechnology, making it a valuable subject for further research in microbiology and environmental science.
| Phenotype | Status |
|---|---|
| Motility | Literature-based |
| Gram staining | Literature-based |
| Aerophilicity | Literature-based |
| Extreme environment tole… | Literature-based |
| Biofilm formation | LLM-based |
| Animal pathogenicity | LLM-based |
| Biosafety level | Literature-based |
| Health association | LLM-based |
| Host association | Literature-based |
| Plant pathogenicity | Literature-based |
| Spore formation | Literature-based |
| Hemolysis | LLM-based |
| Cell shape | LLM-based |