This platform represents an effort to synchronize phenotypic information for microbes. We have applied and collected various models, primarily Large Language Model (LLM) based, to predict phenotypes and compare these predictions to high-quality phenotypes documented in scientific literature or phenotyping studies. For each microbe, we've generated a "card" page that collects this information and illustrates how the predictions overlap with ground truth. Additionally, we provide model performance estimates for widely used public LLM models based on these high-quality data. Use the search functionality below to explore these microbe cards and compare predictions with documented phenotypes.
19163
3884
Polynucleobacter campilacus is a fascinating freshwater bacterium that belongs to the family of Burkholderiaceae. This organism is particularly interesting due to its unique ecological niche and its role in aquatic ecosystems. It is often found in oligotrophic (nutrient-poor) environments, where it contributes to the cycling of organic matter and plays a significant role in the microbial food web. One of the most notable characteristics of P. campilacus is its ability to thrive in low-nutrient conditions, which makes it an excellent model organism for studying microbial adaptation and survival strategies in challenging environments. This adaptability is linked to its metabolic versatility, allowing it to utilize a variety of organic compounds as carbon sources. Additionally, Polynucleobacter species, including P. campilacus, are known for their small cell size and high surface-to-volume ratio, which enhances nutrient uptake efficiency. This characteristic is particularly valuable for researchers studying microbial ecology and evolution, as it provides insights into how microorganisms can optimize their growth in resource-limited habitats. Furthermore, P. campilacus has been the subject of genomic studies that reveal its genetic adaptations to freshwater environments. These studies contribute to our understanding of microbial diversity and the evolutionary processes that shape microbial communities in aquatic ecosystems. The genomic data also hold potential for biotechnological applications, such as bioremediation and bioindicators of water quality. In summary, Polynucleobacter campilacus stands out as a model organism for research in microbial ecology, evolutionary biology, and environmental science, making it a valuable subject for ongoing studies in these fields.
| Phenotype | Status |
|---|---|
| Motility | Literature-based |
| Gram staining | Literature-based |
| Aerophilicity | Literature-based |
| Extreme environment tole… | Literature-based |
| Biofilm formation | LLM-based |
| Animal pathogenicity | LLM-based |
| Biosafety level | Literature-based |
| Health association | LLM-based |
| Host association | Literature-based |
| Plant pathogenicity | Literature-based |
| Spore formation | Literature-based |
| Hemolysis | LLM-based |
| Cell shape | Literature-based |