This platform represents an effort to synchronize phenotypic information for microbes. We have applied and collected various models, primarily Large Language Model (LLM) based, to predict phenotypes and compare these predictions to high-quality phenotypes documented in scientific literature or phenotyping studies. For each microbe, we've generated a "card" page that collects this information and illustrates how the predictions overlap with ground truth. Additionally, we provide model performance estimates for widely used public LLM models based on these high-quality data. Use the search functionality below to explore these microbe cards and compare predictions with documented phenotypes.
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Agrobacterium leguminum is a fascinating bacterium primarily known for its role in the nitrogen-fixing symbiosis with legumes. This organism is particularly interesting due to its ability to form root nodules in various leguminous plants, which are crucial for enhancing soil fertility. The unique relationship between A. leguminum and its host plants allows for the conversion of atmospheric nitrogen into a form that is usable by the plants, thus playing a significant role in sustainable agriculture and ecosystem health. One of the most remarkable features of A. leguminum is its genetic capability to transfer DNA into the plant genome, a process that is mediated by the Ti plasmid (tumor-inducing plasmid). This mechanism not only facilitates the establishment of symbiosis but also has made A. leguminum a valuable tool in genetic engineering and biotechnology. Researchers utilize this natural transformation ability to introduce new traits into plants, making it a key player in the development of genetically modified organisms (GMOs). Furthermore, A. leguminum has been studied for its potential in bioremediation, as it can help in the detoxification of contaminated soils. Its ability to thrive in various environmental conditions makes it a subject of interest for studies aimed at improving soil health and agricultural productivity. The ecological significance of A. leguminum extends beyond its symbiotic relationships, as it contributes to the overall nitrogen cycle, making it an essential organism in both natural and agricultural ecosystems.
| Phenotype | Status |
|---|---|
| Motility | LLM-based |
| Gram staining | Literature-based |
| Aerophilicity | Literature-based |
| Extreme environment tole… | LLM-based |
| Biofilm formation | LLM-based |
| Animal pathogenicity | Literature-based |
| Biosafety level | Literature-based |
| Health association | LLM-based |
| Host association | Literature-based |
| Plant pathogenicity | Literature-based |
| Spore formation | Literature-based |
| Hemolysis | LLM-based |
| Cell shape | Literature-based |