This platform represents an effort to synchronize phenotypic information for microbes. We have applied and collected various models, primarily Large Language Model (LLM) based, to predict phenotypes and compare these predictions to high-quality phenotypes documented in scientific literature or phenotyping studies. For each microbe, we've generated a "card" page that collects this information and illustrates how the predictions overlap with ground truth. Additionally, we provide model performance estimates for widely used public LLM models based on these high-quality data. Use the search functionality below to explore these microbe cards and compare predictions with documented phenotypes.
19163
3884
Sphingobium faniae is a fascinating bacterium belonging to the genus Sphingobium, which is known for its unique metabolic capabilities. This organism is particularly interesting due to its ability to degrade a variety of environmental pollutants, including aromatic compounds and xenobiotics. This characteristic makes it a valuable candidate for bioremediation efforts, as it can help in the detoxification of contaminated environments, such as soil and water. One of the standout features of Sphingobium faniae is its capacity to utilize complex organic compounds as carbon sources, which is indicative of its versatile metabolic pathways. This adaptability not only allows it to thrive in diverse ecological niches but also positions it as a model organism for studying microbial metabolism and environmental microbiology. Additionally, Sphingobium faniae has been noted for its potential in biotechnological applications, particularly in the development of biofilters and bioreactors aimed at pollutant removal. Its unique enzymatic systems are of great interest for researchers looking to harness microbial processes for environmental cleanup. Overall, the ecological significance and biotechnological potential of Sphingobium faniae make it a subject of ongoing research, with implications for both environmental science and industrial applications.
| Phenotype | Status |
|---|---|
| Motility | Literature-based |
| Gram staining | Literature-based |
| Aerophilicity | Literature-based |
| Extreme environment tole… | Literature-based |
| Biofilm formation | LLM-based |
| Animal pathogenicity | LLM-based |
| Biosafety level | Literature-based |
| Health association | LLM-based |
| Host association | LLM-based |
| Plant pathogenicity | Literature-based |
| Spore formation | Literature-based |
| Hemolysis | LLM-based |
| Cell shape | Literature-based |