This platform represents an effort to synchronize phenotypic information for microbes. We have applied and collected various models, primarily Large Language Model (LLM) based, to predict phenotypes and compare these predictions to high-quality phenotypes documented in scientific literature or phenotyping studies. For each microbe, we've generated a "card" page that collects this information and illustrates how the predictions overlap with ground truth. Additionally, we provide model performance estimates for widely used public LLM models based on these high-quality data. Use the search functionality below to explore these microbe cards and compare predictions with documented phenotypes.
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Edwardsiella piscicida is a notable aquatic bacterium primarily associated with fish, particularly in aquaculture settings. This organism is recognized for its role as a pathogen, causing significant economic losses in fish farming due to its ability to induce disease in various fish species, including catfish and tilapia. The pathogenicity of E. piscicida is attributed to its production of virulence factors, such as proteases and hemolysins, which facilitate its invasion and colonization of host tissues. One of the most interesting aspects of E. piscicida is its ability to thrive in diverse aquatic environments, which makes it a model organism for studying host-pathogen interactions in aquatic ecosystems. Research on E. piscicida has provided valuable insights into the mechanisms of bacterial virulence and the immune responses of fish, contributing to the development of better management practices in aquaculture. Furthermore, E. piscicida has been utilized in studies focusing on antibiotic resistance, as it exhibits resistance to several commonly used antibiotics, raising concerns about treatment options in aquaculture. This characteristic makes it a significant subject of study for understanding the dynamics of antibiotic resistance in aquatic pathogens. In summary, Edwardsiella piscicida stands out not only for its impact on fish health and aquaculture economics but also for its contributions to the broader understanding of microbial pathogenesis and antibiotic resistance in aquatic environments.
| Phenotype | Status |
|---|---|
| Motility | LLM-based |
| Gram staining | Literature-based |
| Aerophilicity | Literature-based |
| Extreme environment tole… | Literature-based |
| Biofilm formation | LLM-based |
| Animal pathogenicity | Literature-based |
| Biosafety level | Literature-based |
| Health association | LLM-based |
| Host association | Literature-based |
| Plant pathogenicity | Literature-based |
| Spore formation | Literature-based |
| Hemolysis | LLM-based |
| Cell shape | Literature-based |