This platform represents an effort to synchronize phenotypic information for microbes. We have applied and collected various models, primarily Large Language Model (LLM) based, to predict phenotypes and compare these predictions to high-quality phenotypes documented in scientific literature or phenotyping studies. For each microbe, we've generated a "card" page that collects this information and illustrates how the predictions overlap with ground truth. Additionally, we provide model performance estimates for widely used public LLM models based on these high-quality data. Use the search functionality below to explore these microbe cards and compare predictions with documented phenotypes.
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Alkalibacillus haloalkaliphilus is a fascinating bacterium that thrives in extreme alkaline environments, showcasing its remarkable adaptability to high pH levels. This organism is particularly interesting due to its ability to survive and grow in saline conditions, making it a valuable subject for research in extremophiles and biogeochemical cycles. Its unique metabolic pathways allow it to utilize a variety of substrates, including organic compounds, which can be harnessed for biotechnological applications. One of the standout features of Alkalibacillus haloalkaliphilus is its potential in bioremediation processes, especially in alkaline and saline environments where conventional microorganisms may fail. This capability opens avenues for the development of innovative strategies to clean up contaminated sites, particularly those affected by industrial waste. Additionally, the study of Alkalibacillus haloalkaliphilus contributes to our understanding of microbial diversity and adaptation mechanisms in extreme habitats. Its genomic and metabolic characteristics can provide insights into evolutionary processes and the limits of life on Earth. Research on this organism may also have implications for astrobiology, as it helps scientists understand how life might exist in similar extreme conditions on other planets. Overall, Alkalibacillus haloalkaliphilus stands out as a model organism for studying extremophilic adaptations and their potential applications in environmental and industrial microbiology.
| Phenotype | Status |
|---|---|
| Motility | LLM-based |
| Gram staining | Literature-based |
| Aerophilicity | Literature-based |
| Extreme environment tole… | Literature-based |
| Biofilm formation | LLM-based |
| Animal pathogenicity | LLM-based |
| Biosafety level | Literature-based |
| Health association | LLM-based |
| Host association | Literature-based |
| Plant pathogenicity | Literature-based |
| Spore formation | Literature-based |
| Hemolysis | LLM-based |
| Cell shape | Literature-based |