Welcome to microbe.cards

This platform represents an effort to synchronize phenotypic information for microbes. We have applied and collected various models, primarily Large Language Model (LLM) based, to predict phenotypes and compare these predictions to high-quality phenotypes documented in scientific literature or phenotyping studies. For each microbe, we've generated a "card" page that collects this information and illustrates how the predictions overlap with ground truth. Additionally, we provide model performance estimates for widely used public LLM models based on these high-quality data. Use the search functionality below to explore these microbe cards and compare predictions with documented phenotypes.

Total Species with high-quality annotations

19163

Species with Additional AI-based Predictions

3884

Evaluated Phenotypes

14

Evaluated Models

18

Enter a taxonomy or microbe name to search for detailed information:

Microbe of the Day: Polynucleobacter hirudinilacicola

Polynucleobacter hirudinilacicola is a fascinating freshwater bacterium that belongs to the family of Burkholderiaceae. This organism is particularly notable for its ecological role in freshwater ecosystems, where it contributes to the cycling of nutrients and the maintenance of microbial diversity. One of the most interesting aspects of P. hirudinilacicola is its symbiotic relationship with aquatic organisms, particularly leeches, which serve as hosts. This association not only highlights the organism's adaptability but also its potential importance in understanding host-microbe interactions in aquatic environments. The genome of P. hirudinilacicola has been sequenced, revealing insights into its metabolic capabilities and ecological functions. This genomic information is invaluable for researchers studying microbial ecology and evolution, as it provides a window into the genetic adaptations that allow this bacterium to thrive in specific niches. Furthermore, the organism's ability to utilize a variety of organic compounds makes it a model organism for studying metabolic pathways and microbial interactions in freshwater habitats. In addition to its ecological significance, P. hirudinilacicola has garnered interest in the field of biotechnology. Its metabolic versatility suggests potential applications in bioremediation and the development of bioindicators for freshwater quality assessment. Overall, Polynucleobacter hirudinilacicola stands out as a unique and valuable organism for research, offering insights into microbial ecology, symbiosis, and potential biotechnological applications.

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Annotation types:
Phenotype Status
Motility Literature-based
Gram staining Literature-based
Aerophilicity Literature-based
Extreme environment tole… Literature-based
Biofilm formation LLM-based
Animal pathogenicity LLM-based
Biosafety level Literature-based
Health association LLM-based
Host association Literature-based
Plant pathogenicity Literature-based
Spore formation Literature-based
Hemolysis Missing
Cell shape Literature-based