This platform represents an effort to synchronize phenotypic information for microbes. We have applied and collected various models, primarily Large Language Model (LLM) based, to predict phenotypes and compare these predictions to high-quality phenotypes documented in scientific literature or phenotyping studies. For each microbe, we've generated a "card" page that collects this information and illustrates how the predictions overlap with ground truth. Additionally, we provide model performance estimates for widely used public LLM models based on these high-quality data. Use the search functionality below to explore these microbe cards and compare predictions with documented phenotypes.
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Prevotella oris is a fascinating member of the genus Prevotella, which is known for its role in the human oral microbiome. This anaerobic bacterium is primarily found in the oral cavity and is associated with various periodontal diseases. One of the most interesting aspects of Prevotella oris is its ability to metabolize a wide range of carbohydrates, which allows it to thrive in the complex environment of the mouth where nutrient availability can vary significantly. Unique Metabolic Capabilities: Prevotella oris exhibits unique metabolic pathways that enable it to utilize different substrates, including amino acids and carbohydrates, which can contribute to its survival in the competitive oral ecosystem. This metabolic versatility is particularly valuable for researchers studying microbial interactions and community dynamics in the oral microbiome. Role in Oral Health and Disease: The presence of Prevotella oris has been linked to both health and disease states in the oral cavity. Its abundance can increase in individuals with periodontal disease, making it a potential biomarker for oral health assessments. Understanding its role in disease progression can provide insights into the mechanisms of periodontal disease and inform therapeutic strategies. Research Implications: The study of Prevotella oris can shed light on the complex interactions between oral bacteria and their host, including immune responses and the impact of diet on oral health. Furthermore, its potential involvement in systemic diseases, such as cardiovascular disease and diabetes, highlights its importance in broader health contexts. In summary, Prevotella oris is a significant organism within the oral microbiome, with unique metabolic capabilities and implications for oral health and disease, making it a valuable subject for ongoing research in microbiology and health sciences.
| Phenotype | Status |
|---|---|
| Motility | LLM-based |
| Gram staining | Literature-based |
| Aerophilicity | Literature-based |
| Extreme environment tole… | Literature-based |
| Biofilm formation | LLM-based |
| Animal pathogenicity | Literature-based |
| Biosafety level | Literature-based |
| Health association | LLM-based |
| Host association | Literature-based |
| Plant pathogenicity | Literature-based |
| Spore formation | Literature-based |
| Hemolysis | LLM-based |
| Cell shape | Literature-based |