This platform represents an effort to synchronize phenotypic information for microbes. We have applied and collected various models, primarily Large Language Model (LLM) based, to predict phenotypes and compare these predictions to high-quality phenotypes documented in scientific literature or phenotyping studies. For each microbe, we've generated a "card" page that collects this information and illustrates how the predictions overlap with ground truth. Additionally, we provide model performance estimates for widely used public LLM models based on these high-quality data. Use the search functionality below to explore these microbe cards and compare predictions with documented phenotypes.
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Dickeya fangzhongdai is a notable plant pathogenic bacterium that belongs to the family Pectobacteriaceae. This organism is particularly interesting due to its role in causing soft rot diseases in a variety of economically important crops, including potatoes and other tuberous plants. Its ability to degrade pectin, a major component of plant cell walls, allows it to effectively invade and cause tissue maceration, leading to significant agricultural losses. One of the unique aspects of D. fangzhongdai is its genetic diversity, which has been a subject of research to understand the evolutionary relationships within the Dickeya genus. This diversity is crucial for developing effective management strategies against the diseases it causes. The bacterium has been isolated from various geographical locations, indicating its adaptability and potential for spread in different environmental conditions. From a research perspective, D. fangzhongdai serves as a model organism for studying plant-pathogen interactions, particularly the mechanisms of virulence and host specificity. Understanding these interactions can lead to the development of resistant plant varieties and more sustainable agricultural practices. Additionally, the study of its pathogenicity factors, such as exoenzymes and toxins, provides insights into bacterial strategies for overcoming plant defenses. Overall, Dickeya fangzhongdai is not only significant for its impact on agriculture but also valuable for advancing our understanding of microbial pathogenesis and plant immunity.
| Phenotype | Status |
|---|---|
| Motility | Literature-based |
| Gram staining | Literature-based |
| Aerophilicity | LLM-based |
| Extreme environment tole… | Literature-based |
| Biofilm formation | LLM-based |
| Animal pathogenicity | Literature-based |
| Biosafety level | Literature-based |
| Health association | LLM-based |
| Host association | LLM-based |
| Plant pathogenicity | Literature-based |
| Spore formation | Literature-based |
| Hemolysis | LLM-based |
| Cell shape | Literature-based |