This platform represents an effort to synchronize phenotypic information for microbes. We have applied and collected various models, primarily Large Language Model (LLM) based, to predict phenotypes and compare these predictions to high-quality phenotypes documented in scientific literature or phenotyping studies. For each microbe, we've generated a "card" page that collects this information and illustrates how the predictions overlap with ground truth. Additionally, we provide model performance estimates for widely used public LLM models based on these high-quality data. Use the search functionality below to explore these microbe cards and compare predictions with documented phenotypes.
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Streptomyces parvus is a fascinating actinobacterium known for its remarkable ability to produce a variety of bioactive compounds, making it a valuable organism in pharmaceutical research. This species is part of the larger genus Streptomyces, which is renowned for its role in natural antibiotic production. One of the most interesting aspects of S. parvus is its capacity to synthesize unique secondary metabolites that exhibit antimicrobial properties. These compounds have garnered attention for their potential applications in treating various infections and diseases, particularly in an era where antibiotic resistance is a growing concern. In addition to its antibiotic production, S. parvus is notable for its ability to degrade complex organic materials, which positions it as a potential player in bioremediation efforts. The organism's enzymatic capabilities allow it to break down pollutants and contribute to environmental sustainability. This characteristic is particularly valuable in the context of waste management and the development of eco-friendly bioprocesses. Furthermore, Streptomyces species, including S. parvus, are often studied for their complex life cycles and morphological differentiation, which includes the formation of aerial hyphae and spores. Understanding these developmental processes can provide insights into microbial ecology and evolution. Overall, S. parvus stands out not only for its biochemical potential but also for its ecological significance, making it a subject of ongoing research in microbiology and biotechnology.
| Phenotype | Status |
|---|---|
| Motility | Literature-based |
| Gram staining | Literature-based |
| Aerophilicity | Literature-based |
| Extreme environment tole… | LLM-based |
| Biofilm formation | LLM-based |
| Animal pathogenicity | Literature-based |
| Biosafety level | Literature-based |
| Health association | LLM-based |
| Host association | Literature-based |
| Plant pathogenicity | Literature-based |
| Spore formation | Literature-based |
| Hemolysis | LLM-based |
| Cell shape | Literature-based |