This platform represents an effort to synchronize phenotypic information for microbes. We have applied and collected various models, primarily Large Language Model (LLM) based, to predict phenotypes and compare these predictions to high-quality phenotypes documented in scientific literature or phenotyping studies. For each microbe, we've generated a "card" page that collects this information and illustrates how the predictions overlap with ground truth. Additionally, we provide model performance estimates for widely used public LLM models based on these high-quality data. Use the search functionality below to explore these microbe cards and compare predictions with documented phenotypes.
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Yersinia thracica is a fascinating bacterium that belongs to the genus Yersinia, which is known for its pathogenic members, including the infamous Yersinia pestis, the causative agent of plague. What makes Y. thracica particularly interesting is its ecological niche and potential role in the environment. This organism has been isolated from soil and water samples, indicating its adaptability to various habitats. Its ability to thrive in diverse environments suggests a level of metabolic versatility that could be valuable for bioremediation efforts. One of the unique aspects of Y. thracica is its genetic makeup, which has been studied to understand the evolutionary relationships within the Yersinia genus. Research into its genome may provide insights into the mechanisms of virulence and resistance that are shared among related species. This could have implications for understanding how pathogenic strains evolve and adapt to their hosts. Additionally, Y. thracica has been noted for its potential in biotechnology applications. The metabolic pathways it employs could be harnessed for the production of bioproducts or for the degradation of environmental pollutants. As researchers continue to explore the capabilities of this organism, it may reveal novel biochemical processes that could be applied in industrial microbiology. In summary, Yersinia thracica stands out not only for its ecological significance but also for its potential contributions to scientific research and environmental applications. Its study could enhance our understanding of microbial diversity and the evolutionary dynamics of pathogenic bacteria.
| Phenotype | Status |
|---|---|
| Motility | Literature-based |
| Gram staining | Literature-based |
| Aerophilicity | Literature-based |
| Extreme environment tole… | Literature-based |
| Biofilm formation | LLM-based |
| Animal pathogenicity | Literature-based |
| Biosafety level | Literature-based |
| Health association | LLM-based |
| Host association | LLM-based |
| Plant pathogenicity | Literature-based |
| Spore formation | Literature-based |
| Hemolysis | LLM-based |
| Cell shape | Literature-based |