This platform represents an effort to synchronize phenotypic information for microbes. We have applied and collected various models, primarily Large Language Model (LLM) based, to predict phenotypes and compare these predictions to high-quality phenotypes documented in scientific literature or phenotyping studies. For each microbe, we've generated a "card" page that collects this information and illustrates how the predictions overlap with ground truth. Additionally, we provide model performance estimates for widely used public LLM models based on these high-quality data. Use the search functionality below to explore these microbe cards and compare predictions with documented phenotypes.
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Corynebacterium kalidii is a fascinating species within the genus Corynebacterium, known for its unique metabolic capabilities and ecological significance. This organism is particularly interesting due to its ability to degrade a variety of complex organic compounds, which positions it as a potential candidate for bioremediation applications. Its enzymatic pathways allow it to break down pollutants, making it valuable in environmental microbiology. One of the standout features of Corynebacterium kalidii is its role in the nitrogen cycle. It has been observed to participate in nitrogen fixation, which is crucial for soil health and fertility. This ability to convert atmospheric nitrogen into a form usable by plants underscores its importance in agricultural microbiology. The potential for enhancing crop yields through the application of this microorganism is a significant area of research. Additionally, Corynebacterium kalidii has garnered attention for its unique phylogenetic position within the Corynebacterium genus. Its genetic makeup and metabolic pathways are subjects of ongoing studies, providing insights into evolutionary adaptations among soil-dwelling bacteria. Understanding these adaptations can lead to advancements in microbial ecology and evolutionary biology. In summary, Corynebacterium kalidii stands out not only for its ecological roles but also for its potential applications in biotechnology and agriculture, making it a valuable organism for further research and exploration.
| Phenotype | Status |
|---|---|
| Motility | Literature-based |
| Gram staining | Literature-based |
| Aerophilicity | Literature-based |
| Extreme environment tole… | Literature-based |
| Biofilm formation | LLM-based |
| Animal pathogenicity | LLM-based |
| Biosafety level | Literature-based |
| Health association | LLM-based |
| Host association | Literature-based |
| Plant pathogenicity | Literature-based |
| Spore formation | Literature-based |
| Hemolysis | LLM-based |
| Cell shape | Literature-based |