Welcome to microbe.cards

This platform represents an effort to synchronize phenotypic information for microbes. We have applied and collected various models, primarily Large Language Model (LLM) based, to predict phenotypes and compare these predictions to high-quality phenotypes documented in scientific literature or phenotyping studies. For each microbe, we've generated a "card" page that collects this information and illustrates how the predictions overlap with ground truth. Additionally, we provide model performance estimates for widely used public LLM models based on these high-quality data. Use the search functionality below to explore these microbe cards and compare predictions with documented phenotypes.

Total Species with high-quality annotations

19163

Species with Additional AI-based Predictions

3884

Evaluated Phenotypes

14

Evaluated Models

18

Enter a taxonomy or microbe name to search for detailed information:

Microbe of the Day: Microbulbifer guangxiensis

Microbulbifer guangxiensis is a fascinating marine bacterium that was first isolated from a coastal sediment sample in Guangxi, China. This organism is particularly interesting due to its unique metabolic capabilities, which allow it to thrive in anaerobic environments. It is known for its ability to degrade complex organic compounds, making it a valuable player in biogeochemical cycles, particularly in the breakdown of polysaccharides and other organic materials in marine ecosystems. One of the standout features of M. guangxiensis is its potential application in bioremediation. Its enzymatic systems are capable of breaking down pollutants, which could be harnessed for environmental cleanup efforts. This characteristic positions it as a candidate for research into sustainable waste management solutions. Additionally, M. guangxiensis has been studied for its role in the carbon cycle, contributing to the understanding of how organic matter is recycled in marine environments. Its metabolic pathways are of particular interest to researchers looking to explore microbial interactions in sedimentary ecosystems. The organism's genetic makeup has also been a subject of investigation, revealing insights into the evolutionary adaptations that enable it to survive in its specific habitat. This genetic information can provide a deeper understanding of microbial diversity and the evolutionary pressures faced by marine bacteria. In summary, Microbulbifer guangxiensis stands out not only for its ecological significance but also for its potential applications in biotechnology and environmental science, making it a valuable organism for ongoing research.

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Annotation types:
Phenotype Status
Motility Literature-based
Gram staining Literature-based
Aerophilicity Literature-based
Extreme environment tole… Literature-based
Biofilm formation LLM-based
Animal pathogenicity LLM-based
Biosafety level Literature-based
Health association LLM-based
Host association Literature-based
Plant pathogenicity Literature-based
Spore formation Literature-based
Hemolysis Missing
Cell shape Literature-based