This platform represents an effort to synchronize phenotypic information for microbes. We have applied and collected various models, primarily Large Language Model (LLM) based, to predict phenotypes and compare these predictions to high-quality phenotypes documented in scientific literature or phenotyping studies. For each microbe, we've generated a "card" page that collects this information and illustrates how the predictions overlap with ground truth. Additionally, we provide model performance estimates for widely used public LLM models based on these high-quality data. Use the search functionality below to explore these microbe cards and compare predictions with documented phenotypes.
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Burkholderia guangdongensis is a fascinating bacterium that was first isolated from a patient with pneumonia in Guangdong, China. This organism is part of the Burkholderia genus, which is known for its diverse metabolic capabilities and environmental versatility. One of the most interesting aspects of B. guangdongensis is its potential pathogenicity; it has been associated with various infections, particularly in immunocompromised individuals, making it a subject of interest in clinical microbiology and infectious disease research. This species is notable for its resistance to multiple antibiotics, which poses significant challenges in treatment options for infections. The genetic mechanisms underlying this resistance are a key area of study, as understanding them could lead to better therapeutic strategies and insights into antibiotic resistance in general. Additionally, B. guangdongensis has been shown to possess biodegradative capabilities, particularly in the breakdown of environmental pollutants. This characteristic highlights its potential utility in bioremediation efforts, where it could be employed to clean up contaminated environments, thus contributing to ecological health. Furthermore, the organism's genomic plasticity allows it to adapt to various environments, which is a topic of interest for researchers studying microbial evolution and adaptation. The ability of B. guangdongensis to thrive in diverse ecological niches makes it a valuable model for understanding microbial interactions in both clinical and environmental contexts. In summary, Burkholderia guangdongensis stands out due to its clinical relevance, antibiotic resistance, and bioremediation potential, making it a significant organism for ongoing research in microbiology, environmental science, and public health.
| Phenotype | Status |
|---|---|
| Motility | LLM-based |
| Gram staining | Literature-based |
| Aerophilicity | Literature-based |
| Extreme environment tole… | Literature-based |
| Biofilm formation | LLM-based |
| Animal pathogenicity | LLM-based |
| Biosafety level | Literature-based |
| Health association | LLM-based |
| Host association | LLM-based |
| Plant pathogenicity | Literature-based |
| Spore formation | Literature-based |
| Hemolysis | Literature-based |
| Cell shape | Literature-based |