This platform represents an effort to synchronize phenotypic information for microbes. We have applied and collected various models, primarily Large Language Model (LLM) based, to predict phenotypes and compare these predictions to high-quality phenotypes documented in scientific literature or phenotyping studies. For each microbe, we've generated a "card" page that collects this information and illustrates how the predictions overlap with ground truth. Additionally, we provide model performance estimates for widely used public LLM models based on these high-quality data. Use the search functionality below to explore these microbe cards and compare predictions with documented phenotypes.
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Prevotella histicola is a fascinating anaerobic bacterium that is part of the diverse genus Prevotella, which is known for its role in the human microbiome. This species is particularly interesting due to its association with the gastrointestinal tract and its potential implications in human health. Prevotella histicola has been identified as a key player in the fermentation of dietary fibers, contributing to the production of short-chain fatty acids (SCFAs), which are vital for gut health and have anti-inflammatory properties. One of the unique aspects of Prevotella histicola is its ability to thrive in environments rich in complex carbohydrates, which makes it a valuable organism for studying the interactions between diet, gut microbiota, and overall health. Research has shown that this species may be involved in the modulation of immune responses, highlighting its potential role in maintaining gut homeostasis and influencing systemic health. Furthermore, Prevotella histicola has garnered attention in studies related to dysbiosis, a condition characterized by an imbalance in the gut microbiome that can lead to various diseases. Understanding the functions and mechanisms of Prevotella histicola could provide insights into therapeutic strategies for conditions such as inflammatory bowel disease (IBD) and metabolic disorders. In summary, Prevotella histicola stands out not only for its ecological role in the gut but also for its potential implications in health and disease, making it a significant subject of research in microbiology and nutrition.
| Phenotype | Status |
|---|---|
| Motility | LLM-based |
| Gram staining | Literature-based |
| Aerophilicity | Literature-based |
| Extreme environment tole… | Literature-based |
| Biofilm formation | Literature-based |
| Animal pathogenicity | LLM-based |
| Biosafety level | Literature-based |
| Health association | LLM-based |
| Host association | Literature-based |
| Plant pathogenicity | Literature-based |
| Spore formation | Literature-based |
| Hemolysis | LLM-based |
| Cell shape | Literature-based |