This platform represents an effort to synchronize phenotypic information for microbes. We have applied and collected various models, primarily Large Language Model (LLM) based, to predict phenotypes and compare these predictions to high-quality phenotypes documented in scientific literature or phenotyping studies. For each microbe, we've generated a "card" page that collects this information and illustrates how the predictions overlap with ground truth. Additionally, we provide model performance estimates for widely used public LLM models based on these high-quality data. Use the search functionality below to explore these microbe cards and compare predictions with documented phenotypes.
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Staphylococcus argensis is a fascinating species within the Staphylococcus genus, notable for its unique ecological niche and potential applications in biotechnology. This organism is primarily isolated from marine environments, particularly associated with fish and other aquatic organisms, which sets it apart from many of its terrestrial relatives. Its ability to thrive in saline conditions makes it an interesting subject for studies on osmoregulation and adaptation mechanisms in extreme environments. One of the most intriguing aspects of S. argensis is its potential for producing bioactive compounds. Research has indicated that this species may synthesize antimicrobial peptides, which could be valuable in the development of new antibiotics, especially in the face of rising antibiotic resistance. The exploration of these compounds could lead to significant advancements in pharmaceutical applications. Additionally, S. argensis has been studied for its role in the marine ecosystem, particularly in the context of its interactions with other microorganisms and its contribution to the microbial community structure. Understanding these interactions can provide insights into nutrient cycling and the overall health of marine environments. In summary, Staphylococcus argensis stands out due to its marine habitat, potential biotechnological applications, and its role in marine ecology, making it a valuable organism for further research in microbiology and environmental science.
| Phenotype | Status |
|---|---|
| Motility | Literature-based |
| Gram staining | Literature-based |
| Aerophilicity | Literature-based |
| Extreme environment tole… | Literature-based |
| Biofilm formation | LLM-based |
| Animal pathogenicity | LLM-based |
| Biosafety level | Literature-based |
| Health association | LLM-based |
| Host association | Literature-based |
| Plant pathogenicity | Literature-based |
| Spore formation | Literature-based |
| Hemolysis | Literature-based |
| Cell shape | Literature-based |