Burkholderia ubonensis

General Information

Burkholderia ubonensis is a fascinating microorganism belonging to the genus Burkholderia, which is known for its diverse metabolic capabilities and environmental adaptability. This species was first isolated from soil in Ubon Ratchathani, Thailand, and has since garnered interest for several reasons. One of the most intriguing aspects of B. ubonensis is its potential for bioremediation. Members of the Burkholderia genus are renowned for their ability to degrade a wide range of organic pollutants, and B. ubonensis is no exception. It has shown promise in breaking down complex compounds, making it a valuable candidate for cleaning up contaminated environments. Additionally, B. ubonensis exhibits a unique ability to form symbiotic relationships with plants. This characteristic is particularly valuable in agriculture, where it can be used to promote plant growth and health. The bacterium's ability to fix nitrogen and solubilize phosphate enhances soil fertility, which can lead to increased crop yields. From a research perspective, B. ubonensis is also notable for its genomic plasticity. The organism's genome contains a wealth of genes that confer resistance to various antibiotics and heavy metals, making it a model organism for studying microbial resistance mechanisms. This resistance is not only of academic interest but also has practical implications for developing new strategies to combat antibiotic-resistant pathogens. In summary, Burkholderia ubonensis stands out due to its bioremediation potential, symbiotic plant relationships, and genomic adaptability. These characteristics make it a valuable subject for ongoing research in environmental science, agriculture, and microbiology.

Burkholderia ubonensis is a fascinating bacterium that was first isolated from soil in Ubon Ratchathani, Thailand. This organism is part of the Burkholderia genus, which is known for its remarkable metabolic versatility and ability to thrive in diverse environments. One of the most interesting aspects of B. ubonensis is its potential for bioremediation, as it has shown the ability to degrade various environmental pollutants, including aromatic compounds. This characteristic makes it a valuable candidate for research in environmental microbiology and biotechnology, particularly in efforts to clean up contaminated sites. Additionally, B. ubonensis is notable for its production of secondary metabolites, which may have implications in pharmaceutical research. The ability of this species to produce bioactive compounds could lead to the discovery of new antibiotics or other therapeutic agents, contributing to the ongoing search for novel treatments against resistant pathogens. Furthermore, the genetic and biochemical pathways of B. ubonensis are of interest to researchers studying microbial ecology and evolution. Its adaptability to different ecological niches provides insights into the mechanisms of survival and competition among microorganisms in complex environments. Overall, Burkholderia ubonensis stands out as a unique organism with significant potential for both environmental and medical research.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Betaproteobacteria

Order: Burkholderiales

Family: Burkholderiaceae

Genus: Burkholderia

Species: Burkholderia ubonensis

NCBI ID

101571

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/718/655/GCF_001718655.1_ASM171865v1

File for sequence-based predictions:
GCF_001718655.1_ASM171865v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Burkholderia ubonensis is a member of the Burkholderia genus, which is known for its diverse ecological roles and clinical significance. This bacterium has been associated with various infections, particularly in immunocompromised individuals. It is recognized for its pathogenicity, often leading to severe outcomes in patients with underlying health conditions. The organism can cause respiratory infections, skin infections, and has been implicated in bacteremia and sepsis cases. One of the notable aspects of Burkholderia ubonensis is its antimicrobial resistance. It exhibits resistance to multiple classes of antibiotics, which complicates treatment options and poses a significant challenge in clinical settings. This resistance is often attributed to the presence of specific resistance genes and efflux pumps that enable the organism to evade the effects of commonly used antibiotics. In terms of immune evasion, Burkholderia ubonensis has developed strategies to survive within host cells, which allows it to avoid detection and destruction by the immune system. This ability to persist in host tissues contributes to its pathogenic potential and complicates the management of infections. While Burkholderia ubonensis is primarily recognized for its role in human disease, there is ongoing research into its potential applications in biotechnology and medicine. Some species within the Burkholderia genus are being explored for their use in bioremediation and as probiotics, although specific applications for Burkholderia ubonensis remain to be fully elucidated. Overall, the clinical implications of Burkholderia ubonensis underscore the importance of monitoring and understanding this organism in both clinical and environmental contexts.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Burkholderia ubonensis is a bacterium that is primarily associated with soil environments and plant rhizospheres. This microorganism thrives in nutrient-rich soils, often found in agricultural settings where it plays a significant role in promoting plant health and growth. Its ability to degrade various organic compounds allows it to adapt to diverse soil types, including sandy and clay-rich soils, making it a versatile inhabitant of terrestrial ecosystems. In its ecological niche, Burkholderia ubonensis engages in mutualistic relationships with plants, enhancing nutrient uptake, particularly nitrogen, through its ability to fix atmospheric nitrogen. This symbiotic interaction not only benefits the plants but also contributes to the overall soil fertility, promoting a healthier ecosystem. Additionally, Burkholderia ubonensis is known for its role in bioremediation, where it helps in the degradation of pollutants, thus playing a crucial part in maintaining environmental health. Its presence in contaminated sites can lead to the breakdown of harmful substances, showcasing its adaptability and importance in ecosystem restoration efforts. Overall, Burkholderia ubonensis exemplifies the intricate relationships within terrestrial biomes, highlighting its contributions to soil health, plant growth, and environmental sustainability.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Burkholderia ubonensis has shown significant potential in various industrial applications. One of the most notable areas is in biotechnology, where Burkholderia ubonensis is utilized for its ability to produce enzymes that can be harnessed in biocatalysis processes. These enzymes are particularly effective in breaking down complex organic compounds, making them valuable in the production of biofuels through fermentation processes. In the realm of waste management, Burkholderia ubonensis has demonstrated capabilities in biodegradation, particularly in the breakdown of pollutants and toxic compounds in contaminated environments. This makes it a candidate for bioremediation efforts, where it can help restore ecosystems affected by industrial waste. Furthermore, the organism has potential applications in pharmaceutical development, where its metabolic pathways can be explored for the production of bioactive compounds. The unique biochemical properties of Burkholderia ubonensis may lead to the discovery of new drugs or therapeutic agents. Overall, the versatility of Burkholderia ubonensis in these areas highlights its importance in advancing sustainable practices across multiple industries.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	mistralai/mistral-7b-instruct	google/gemini-flash-1.5	mistralai/mixtral-8x7b-instruct:nitro	google/gemma-7b-it	google/palm-2-chat-bison-32k	meta-llama/llama-3-8b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	anthropic/claude-3.5-sonnet	anthropic/claude-3-haiku:beta	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/gemini-pro-1.5	google/gemini-pro-1.5	google/gemini-pro	google/gemini-pro	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4	openai/gpt-4	openchat/openchat-7b	openchat/openchat-7b	openai/gpt-4o	openai/gpt-4o	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain variable ✗	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain variable ✗
Aerophilicity	aerobic	aerotolerant ✗	N/A	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	false ✓	false ✓	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	true	false	true	true	true	true	false	true	true	true	true	true	true	true	true	true	false	false	false	false	true	true	true	true	false	false
Biosafety level	biosafety level 1	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	false	false
Host association	FALSE	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Plant pathogenicity	TRUE	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗
Spore formation	FALSE	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	gamma	N/A	gamma ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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