Streptomyces ipomoeae

General Information

Streptomyces ipomoeae is a fascinating microorganism belonging to the genus Streptomyces, which is renowned for its prolific production of secondary metabolites. One of the most intriguing aspects of S. ipomoeae is its ability to produce a variety of bioactive compounds, including antibiotics, antifungals, and antitumor agents. This makes it a valuable organism in the field of biotechnology and pharmaceutical research. A key characteristic of S. ipomoeae is its role in the natural environment, particularly in soil ecosystems. It contributes to the decomposition of organic matter, thereby playing a crucial role in nutrient cycling. This ecological function is complemented by its ability to form complex multicellular structures, such as mycelium and spores, which are typical of the Streptomyces genus. From a research perspective, S. ipomoeae is particularly interesting due to its genetic and metabolic diversity. The genome of S. ipomoeae harbors numerous gene clusters responsible for the biosynthesis of secondary metabolites. This genetic potential is a treasure trove for discovering new drugs and understanding the mechanisms of natural product biosynthesis. Moreover, S. ipomoeae has been studied for its interactions with plants, especially sweet potatoes (Ipomoea batatas), from which it derives its name. These interactions can be beneficial, such as promoting plant growth or protecting against pathogens, making S. ipomoeae a candidate for agricultural applications. In summary, Streptomyces ipomoeae stands out due to its biotechnological potential, ecological importance, and genetic richness, making it a subject of significant interest in various scientific fields.

Streptomyces ipomoeae is a fascinating actinobacterium known for its unique ecological role and potential applications in biotechnology. This species is primarily isolated from the rhizosphere of sweet potatoes (Ipomoea batatas), which highlights its symbiotic relationship with plants. The presence of S. ipomoeae in the soil environment suggests its involvement in nutrient cycling and plant health, making it an important organism for agricultural research. One of the most interesting aspects of S. ipomoeae is its ability to produce a variety of bioactive compounds, including antibiotics and antifungal agents. This characteristic positions it as a valuable resource in the search for new pharmaceuticals, particularly in the fight against antibiotic-resistant pathogens. The secondary metabolites produced by this species have been shown to exhibit significant antimicrobial activity, which is a key area of interest for researchers in medicinal chemistry and microbiology. Additionally, S. ipomoeae contributes to the diversity of the Streptomyces genus, which is renowned for its prolific production of natural products. The genetic and metabolic pathways of S. ipomoeae are of particular interest, as they may provide insights into the mechanisms of secondary metabolite biosynthesis. Understanding these pathways can lead to the discovery of novel compounds with therapeutic potential. In summary, Streptomyces ipomoeae stands out due to its ecological significance, its role in plant health, and its potential as a source of new antibiotics. Its study not only enhances our understanding of microbial interactions in the soil but also opens avenues for biotechnological applications in medicine and agriculture.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Kitasatosporales

Family: Streptomycetaceae

Genus: Streptomyces

Species: Streptomyces ipomoeae

NCBI ID

103232

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/547/165/GCF_006547165.1_ASM654716v1

File for sequence-based predictions:
GCF_006547165.1_ASM654716v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Streptomyces ipomoeae is a member of the genus Streptomyces, which is known for its significant role in the production of antibiotics and other bioactive compounds. While S. ipomoeae itself is not primarily associated with human disease, it has been studied for its potential applications in medicine and agriculture. Clinical implications of S. ipomoeae include its ability to produce secondary metabolites that may have antimicrobial properties, which could be harnessed for therapeutic use against various pathogens. In terms of pathogenicity, S. ipomoeae is not typically recognized as a human pathogen; however, its relatives within the Streptomyces genus have been implicated in opportunistic infections, particularly in immunocompromised individuals. The organism's ability to produce enzymes and metabolites may also contribute to its role in soil health and plant growth, which indirectly supports human health by promoting food security. Furthermore, the study of S. ipomoeae contributes to the understanding of antimicrobial resistance mechanisms, as many Streptomyces species are known to produce compounds that can inhibit the growth of resistant bacteria. This highlights the potential for discovering new therapeutics from this organism. Overall, while Streptomyces ipomoeae may not have direct clinical relevance as a pathogen, its contributions to antibiotic production and agricultural health underscore its importance in the broader context of human health.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Streptomyces ipomoeae is a species of actinobacteria that is primarily associated with soil ecosystems and plant rhizospheres. This microorganism thrives in nutrient-rich environments, particularly in areas where organic matter is abundant, such as decaying plant material and agricultural soils. Its presence is often linked to the decomposition of organic substances, contributing to nutrient cycling within these biomes. In the rhizosphere, Streptomyces ipomoeae plays a crucial role in promoting plant health through its ability to produce various bioactive compounds, including antibiotics and growth-promoting substances. This interaction not only helps in suppressing soil-borne pathogens but also enhances the overall growth and resilience of plants, establishing a form of mutualistic symbiosis. Furthermore, Streptomyces ipomoeae is known for its ability to adapt to varying environmental conditions, including changes in moisture and nutrient availability. This adaptability allows it to thrive in diverse habitats, from tropical soils to temperate agricultural fields. Its ecological significance is underscored by its contribution to soil fertility and its potential use in sustainable agriculture as a biocontrol agent against pests and diseases. Overall, the biomes associated with Streptomyces ipomoeae are characterized by their rich biodiversity and complex interactions, where this microorganism plays a vital role in maintaining ecological balance and promoting plant health.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Streptomyces ipomoeae has shown significant potential in various industrial applications. One of the most notable areas is in biotechnology, where it is utilized for its ability to produce a range of bioactive compounds, including antibiotics and enzymes. These compounds are crucial in the development of pharmaceuticals, particularly in the production of natural antibiotics that can combat resistant bacterial strains. In the realm of waste management, Streptomyces ipomoeae has demonstrated capabilities in biodegradation, where it can break down complex organic materials, thus aiding in the treatment of agricultural and industrial waste. This process not only helps in reducing waste volume but also in recycling nutrients back into the ecosystem. Furthermore, this microorganism plays a role in biofuel production. Through fermentation processes, Streptomyces ipomoeae can convert biomass into biofuels, contributing to sustainable energy solutions. The enzymes produced by this organism can facilitate the breakdown of lignocellulosic materials, making it easier to extract fermentable sugars for bioethanol production. Overall, Streptomyces ipomoeae is a versatile microorganism with applications spanning pharmaceutical development, waste treatment, and renewable energy, showcasing its importance in modern industrial processes.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	google/gemini-pro	meta-llama/llama-3-70b-instruct:nitro	google/gemini-flash-1.5	google/gemini-flash-1.5	google/palm-2-chat-bison-32k	anthropic/claude-3.5-sonnet	mistralai/mistral-7b-instruct	mistralai/mixtral-8x7b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	google/gemma-7b-it	google/gemma-7b-it	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	anthropic/claude-3-haiku:beta	anthropic/claude-3-haiku:beta
Motility	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	N/A	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain variable ✗	N/A	gram stain positive ✓
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 3 ✗	biosafety level 3 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	true	true	false	true	true	false	false	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Host association	FALSE	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Plant pathogenicity	TRUE	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Spore formation	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Hemolysis	N/A	N/A	N/A	gamma	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	tail	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗

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