Pseudomonas zeshuii

General Information

Pseudomonas zeshuii is a fascinating microorganism belonging to the genus Pseudomonas, which is known for its metabolic diversity and environmental versatility. This species was first isolated from a soil sample in China, highlighting its ecological significance. One of the most intriguing aspects of Pseudomonas zeshuii is its ability to degrade a variety of complex organic compounds, making it a valuable candidate for bioremediation efforts. The bacterium exhibits a remarkable capacity for biodegradation, particularly in breaking down pollutants such as polycyclic aromatic hydrocarbons (PAHs) and other persistent organic pollutants (POPs). This capability is of great interest to environmental microbiologists and biotechnologists who are exploring sustainable methods to clean up contaminated environments. Additionally, Pseudomonas zeshuii has been noted for its potential in plant growth promotion. It can produce siderophores, which are compounds that bind and sequester iron from the environment, making it more available to plants. This trait can enhance plant growth and health, offering a natural alternative to chemical fertilizers. From a genetic perspective, the genome of Pseudomonas zeshuii reveals a wealth of genes associated with metabolic pathways that are not only involved in the degradation of environmental pollutants but also in the synthesis of bioactive compounds. These bioactive compounds can have applications in agriculture, medicine, and industry. In summary, Pseudomonas zeshuii stands out due to its bioremediation potential, plant growth-promoting properties, and genetic versatility, making it a microorganism of significant interest for both environmental and biotechnological applications.

Pseudomonas zeshuii is a fascinating bacterium that has garnered attention due to its unique ecological niche and potential applications in biotechnology. This species was first isolated from a freshwater environment, highlighting its adaptability to aquatic ecosystems. One of the most interesting aspects of Pseudomonas zeshuii is its ability to degrade a variety of organic compounds, making it a valuable organism for bioremediation efforts. Its metabolic versatility allows it to utilize diverse carbon sources, which is crucial for the breakdown of pollutants in contaminated water bodies. In addition to its environmental significance, Pseudomonas zeshuii has been studied for its potential in agricultural applications. The bacterium exhibits plant growth-promoting properties, which can enhance crop yields and improve soil health. This characteristic is particularly valuable in sustainable agriculture, where reducing chemical fertilizers is a priority. Furthermore, Pseudomonas zeshuii is part of the larger Pseudomonas genus, known for its remarkable genetic diversity and adaptability. This genus is often studied for its role in various biotechnological applications, including the production of bioplastics and biofuels. The genetic and metabolic pathways of Pseudomonas zeshuii may provide insights into novel bioprocesses and contribute to the development of environmentally friendly technologies. Overall, Pseudomonas zeshuii stands out not only for its ecological role but also for its potential contributions to environmental sustainability and agricultural productivity, making it a subject of interest for researchers in microbiology and environmental sciences.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas zeshuii

NCBI ID

1076620

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/141/925/GCA_900141925.1_IMG-taxon_2663762797_annotated_assembly

File for sequence-based predictions:
GCA_900141925.1_IMG-taxon_2663762797_annotated_assembly_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas zeshuii is a member of the Pseudomonas genus, which is known for its environmental versatility and potential pathogenicity. While specific clinical data on Pseudomonas zeshuii is limited, its close relatives, particularly Pseudomonas aeruginosa, provide insight into potential clinical implications. This organism may be associated with infections in immunocompromised patients, particularly in those with underlying conditions such as cystic fibrosis or burns. Pathogenicity is often linked to its ability to form biofilms and produce a variety of virulence factors, which can contribute to chronic infections and resistance to antimicrobial agents. Furthermore, members of the Pseudomonas genus are known for their antimicrobial resistance mechanisms, including the production of beta-lactamases and efflux pumps, which can complicate treatment options. The potential for Pseudomonas zeshuii to exhibit similar resistance patterns raises concerns for healthcare settings, particularly in relation to nosocomial infections. In terms of human health, the organism's role in the microbiome is not well characterized, but it may have implications in environmental exposure and opportunistic infections. Understanding the interactions of Pseudomonas zeshuii with the human immune system, including any immune evasion strategies, is crucial for assessing its clinical relevance. Overall, while direct evidence of Pseudomonas zeshuii as a pathogen is sparse, its association with the broader Pseudomonas genus suggests a need for vigilance in clinical settings.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas zeshuii is a versatile bacterium commonly found in various aquatic environments and soil ecosystems. This microorganism thrives particularly well in freshwater habitats, such as rivers and lakes, where it plays a crucial role in nutrient cycling and organic matter decomposition. Its ability to degrade a wide range of organic compounds makes it an important player in the bioremediation of contaminated water bodies, helping to restore ecological balance by breaking down pollutants and enhancing water quality. In addition to its presence in freshwater ecosystems, Pseudomonas zeshuii is also found in terrestrial environments, particularly in soil rich in organic material. Here, it contributes to the soil health by promoting nutrient availability and supporting plant growth through its interactions with plant roots. This bacterium can form beneficial relationships with plants, enhancing their nutrient uptake and providing protection against certain pathogens, showcasing its role in symbiotic relationships within the ecosystem. Furthermore, Pseudomonas zeshuii exhibits remarkable environmental adaptability, allowing it to survive in varying conditions, including those with high levels of salinity or pollutants. This adaptability not only aids in its survival but also enhances its effectiveness in bioremediation efforts, making it a valuable organism in the fight against environmental degradation.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas zeshuii has shown significant potential in various industrial applications due to its versatile metabolic capabilities. One of the primary areas of interest is in biotechnology, where Pseudomonas zeshuii is utilized in biodegradation processes. This organism is capable of breaking down complex organic pollutants, making it valuable in waste management strategies aimed at treating contaminated environments, such as oil spills and heavy metal-laden waste. In the realm of biofuel production, Pseudomonas zeshuii can be involved in fermentation processes that convert biomass into bioethanol or other biofuels. Its ability to metabolize various substrates enhances the efficiency of biofuel production, contributing to more sustainable energy solutions. Furthermore, this microorganism has potential applications in pharmaceutical development. It can produce bioactive compounds through its enzymatic activities, which may lead to the discovery of new drugs or therapeutic agents. The enzymatic pathways utilized by Pseudomonas zeshuii can be harnessed for the synthesis of valuable pharmaceuticals, showcasing its importance in the biotechnology sector. Overall, Pseudomonas zeshuii exemplifies a microorganism with diverse industrial applications, particularly in biodegradation, biofuel production, and pharmaceutical development, making it a subject of interest for ongoing research and development in these fields.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	mistralai/mixtral-8x7b-instruct:nitro	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	google/gemini-pro	mistralai/mistral-7b-instruct	meta-llama/llama-3-70b-instruct:nitro	google/palm-2-chat-bison-32k	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	anthropic/claude-3-haiku:beta	anthropic/claude-3-haiku:beta	google/gemma-7b-it	google/gemma-7b-it	google/gemini-flash-1.5	google/gemini-flash-1.5	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	openai/gpt-4o	openai/gpt-4o	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	FALSE	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	facultatively anaerobic ✗	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	TRUE	false ✗	false ✗	false ✗	true ✓	false ✗	false ✗	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	true	true	false	true	false	false	false	true	false	false	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Host association	FALSE	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	alpha	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	spirillum ✗	spirillum ✗

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