Bradyrhizobium yuanmingense

General Information

Bradyrhizobium yuanmingense is a fascinating microorganism primarily known for its role in nitrogen fixation, a process that is crucial for plant growth and soil health. This bacterium forms symbiotic relationships with leguminous plants, such as those in the genus Lespedeza. One of the most remarkable aspects of B. yuanmingense is its ability to convert atmospheric nitrogen into ammonia, which plants can then utilize for growth. This not only reduces the need for chemical fertilizers but also promotes sustainable agricultural practices. Another noteworthy feature of Bradyrhizobium yuanmingense is its genetic diversity and adaptability to various environmental conditions. This makes it a valuable subject for research in microbial ecology and evolutionary biology. Scientists are particularly interested in its genome, which provides insights into the mechanisms of symbiosis and nitrogen fixation. Moreover, B. yuanmingense has been studied for its potential in bioremediation. Its ability to survive in contaminated soils and assist in the degradation of pollutants makes it a promising candidate for environmental cleanup efforts. In summary, Bradyrhizobium yuanmingense is a microorganism of significant interest due to its crucial role in nitrogen fixation, genetic adaptability, and potential applications in sustainable agriculture and bioremediation.

Bradyrhizobium yuanmingense is a fascinating species of nitrogen-fixing bacteria that belongs to the genus Bradyrhizobium. This organism is particularly notable for its symbiotic relationship with leguminous plants, where it forms root nodules and facilitates the conversion of atmospheric nitrogen into a form that is usable by the plant. This process is crucial for enhancing soil fertility and promoting sustainable agricultural practices. One of the unique aspects of B. yuanmingense is its ability to thrive in various environmental conditions, which makes it a valuable candidate for research in the field of environmental microbiology. Its adaptability allows it to be studied for potential applications in improving crop yields in less-than-ideal soil conditions, thereby contributing to food security. Additionally, B. yuanmingense has been shown to possess a diverse range of metabolic capabilities, which can be explored for biotechnological applications. The genetic and biochemical pathways involved in its nitrogen-fixing ability are of significant interest, as they can provide insights into the mechanisms of symbiosis and nitrogen metabolism. Furthermore, this species has been isolated from various geographical locations, indicating its ecological versatility. This characteristic opens avenues for research into the evolutionary adaptations of B. yuanmingense and its interactions with different plant hosts. Understanding these interactions can lead to advancements in agricultural practices, particularly in the context of sustainable farming and the development of biofertilizers. In summary, Bradyrhizobium yuanmingense stands out due to its important role in nitrogen fixation, environmental adaptability, and potential biotechnological applications, making it a valuable organism for both ecological and agricultural research.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Alphaproteobacteria

Order: Hyphomicrobiales

Family: Nitrobacteraceae

Genus: Bradyrhizobium

Species: Bradyrhizobium yuanmingense

NCBI ID

108015

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/005/157/565/GCF_005157565.1_ASM515756v1

File for sequence-based predictions:
GCF_005157565.1_ASM515756v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Bradyrhizobium yuanmingense is primarily known for its role in nitrogen fixation in leguminous plants, but its clinical implications are less well-documented compared to other members of the genus. However, it has been isolated from various environmental sources, including soil and root nodules, which raises questions about its potential interactions with human health. While B. yuanmingense is not typically associated with pathogenicity in humans, its close relatives in the Bradyrhizobium genus have been implicated in rare cases of infections in immunocompromised individuals. Research into its antimicrobial resistance patterns is limited, but understanding its genetic makeup could provide insights into potential resistance mechanisms that may be shared with other bacteria. Furthermore, the study of B. yuanmingense may contribute to the development of probiotics or therapeutics aimed at enhancing plant health, which indirectly supports human health through improved food security. Overall, while B. yuanmingense does not have a well-established clinical relevance, its ecological role and potential interactions with human-associated microbiomes warrant further investigation.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Bradyrhizobium yuanmingense is a nitrogen-fixing bacterium primarily associated with the root nodules of leguminous plants, particularly in tropical and subtropical regions. This microorganism thrives in a variety of soil types, often found in well-drained, nutrient-rich environments that support its symbiotic relationships with host plants. Its presence is crucial in enhancing soil fertility through the conversion of atmospheric nitrogen into a form that is accessible to plants, thus playing a vital role in agricultural ecosystems and natural habitats alike. In terms of ecological niches, B. yuanmingense is often found in agricultural fields, grasslands, and forests, where it forms symbiotic relationships with legumes such as soybeans and peanuts. These interactions not only benefit the host plants by improving their nitrogen uptake but also contribute to the overall health of the soil ecosystem by promoting microbial diversity and activity. Furthermore, B. yuanmingense exhibits remarkable environmental adaptability, allowing it to survive in varying conditions, including drought and salinity. This adaptability is essential for its survival in changing climates and contributes to its role in sustainable agriculture, particularly in regions facing environmental stressors. Overall, Bradyrhizobium yuanmingense is a key player in maintaining the balance of nutrient cycling and supporting plant growth in its associated biomes.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The bacterium Bradyrhizobium yuanmingense is primarily recognized for its role in agricultural biotechnology, particularly in the context of nitrogen fixation. This microorganism forms symbiotic relationships with leguminous plants, enhancing soil fertility by converting atmospheric nitrogen into a form that plants can utilize. This process is crucial for sustainable agriculture, reducing the need for chemical fertilizers and promoting soil health. In addition to its agricultural applications, Bradyrhizobium yuanmingense has potential in waste management. Its ability to degrade organic matter can be harnessed in biodegradation processes, where it contributes to the breakdown of complex organic compounds in waste materials, thus aiding in the treatment of agricultural and industrial waste. Furthermore, there is growing interest in the use of Bradyrhizobium yuanmingense in biofuel production. The bacterium's metabolic pathways can be explored for the conversion of biomass into biofuels, particularly through fermentation processes that yield bioethanol from plant materials. Lastly, the enzymatic activities of Bradyrhizobium yuanmingense may have implications in pharmaceutical development. The enzymes produced by this microorganism can be studied for their potential in synthesizing bioactive compounds, which could lead to the development of new drugs or therapeutic agents. Overall, Bradyrhizobium yuanmingense showcases a diverse range of industrial applications, particularly in enhancing agricultural productivity and contributing to sustainable practices.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 2

Phenotype	High-quality annotation	google/gemini-pro	google/gemini-flash-1.5	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	google/gemma-7b-it	mistralai/mistral-7b-instruct	meta-llama/llama-3-70b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	anthropic/claude-3-haiku:beta	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-4o	openai/gpt-4o	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	openchat/openchat-7b	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	TRUE	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain positive ✗	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain positive ✗
Aerophilicity	aerobic	facultatively anaerobic ✗	facultatively anaerobic ✗	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	facultatively anaerobic ✗	facultatively anaerobic ✗	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true
Animal pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Host association	FALSE	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗
Plant pathogenicity	FALSE	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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