Erythrobacter colymbi

General Information

Erythrobacter colymbi is a fascinating microorganism that belongs to the genus Erythrobacter. This genus is known for its members' ability to thrive in marine environments, often characterized by their distinctive pigmentation due to the presence of carotenoids. One of the most intriguing aspects of E. colymbi is its potential role in bioremediation. This organism has been studied for its ability to degrade various organic pollutants, making it a valuable candidate for cleaning up contaminated marine environments. Another unique feature of E. colymbi is its metabolic versatility. It can utilize a wide range of carbon sources, which allows it to adapt to different environmental conditions. This adaptability is particularly interesting for researchers studying microbial ecology and the dynamics of microbial communities in marine ecosystems. Moreover, E. colymbi has been noted for its production of bioactive compounds. These compounds have potential applications in pharmaceuticals and biotechnology, offering a promising avenue for the discovery of new drugs and therapeutic agents. The study of these bioactive compounds can also provide insights into the organism's survival strategies and interactions with other marine microorganisms. In summary, Erythrobacter colymbi is a microorganism of significant interest due to its bioremediation potential, metabolic versatility, and production of bioactive compounds. These characteristics make it a valuable subject for research in environmental science, microbial ecology, and biotechnology.

Erythrobacter colymbi is a fascinating marine bacterium that has garnered attention due to its unique ecological role and biochemical capabilities. This organism is primarily found in oceanic environments, particularly in the vicinity of coastal waters, where it plays a significant role in the cycling of organic matter. One of the most interesting aspects of Erythrobacter colymbi is its ability to utilize light energy for photosynthesis, which is a characteristic that sets it apart from many other bacteria. This capability allows it to thrive in light-rich environments, contributing to the primary production in marine ecosystems. Moreover, Erythrobacter colymbi is known for its production of carotenoids, which are pigments that not only provide the organism with protection against oxidative stress but also contribute to its distinctive coloration. The presence of these pigments makes Erythrobacter colymbi a subject of interest for researchers studying natural pigments and their potential applications in biotechnology, such as in the food and cosmetic industries. In addition to its ecological significance, Erythrobacter colymbi has been studied for its potential in bioremediation processes. Its ability to degrade various organic compounds positions it as a valuable organism in efforts to clean up polluted marine environments. This dual role as both a primary producer and a potential bioremediator highlights the importance of Erythrobacter colymbi in marine microbiology and environmental science. Overall, the unique characteristics of Erythrobacter colymbi make it a compelling subject for ongoing research in various fields, including ecology, biochemistry, and environmental science.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Alphaproteobacteria

Order: Sphingomonadales

Family: Erythrobacteraceae

Genus: Erythrobacter

Species: Erythrobacter colymbi

NCBI ID

1161202

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/155/685/GCF_002155685.1_ASM215568v1

File for sequence-based predictions:
GCF_002155685.1_ASM215568v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Erythrobacter colymbi is a member of the Erythrobacteraceae family, primarily known for its role in aquatic environments. While it is not commonly associated with human disease, its clinical relevance can be inferred from its ecological niche and potential interactions with human health. This organism has been studied for its ability to perform photosynthesis, which may have implications in understanding microbial communities in various environments, including those that impact human health indirectly. Pathogenicity: Currently, there is limited evidence linking Erythrobacter colymbi to infections in humans. However, its presence in marine environments suggests that it could potentially be involved in opportunistic infections, particularly in immunocompromised individuals. Further research is needed to clarify its pathogenic potential. Antimicrobial Resistance: There is no well-documented evidence of antimicrobial resistance associated with Erythrobacter colymbi. However, as with many environmental bacteria, there is a potential for acquiring resistance genes, which could pose a risk if the organism were to enter clinical settings. Medical Applications: While Erythrobacter colymbi itself is not used in medical applications, its relatives in the Erythrobacter genus have been explored for their biotechnological potential, including the production of bioactive compounds that could have therapeutic uses. Understanding the metabolic pathways of such organisms may lead to novel applications in medicine. Immune Evasion Strategies: There is currently no specific information regarding immune evasion strategies employed by Erythrobacter colymbi. Its ecological role suggests that it may possess mechanisms to survive in diverse environments, but these have not been characterized in the context of human health. In summary, while Erythrobacter colymbi is not directly linked to human disease, its ecological significance and potential interactions with human health warrant further investigation to fully understand its implications in clinical microbiology.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Erythrobacter colymbi is a marine bacterium primarily found in coastal waters and marine sediments. This microorganism thrives in environments characterized by high nutrient availability and moderate light conditions, often associated with phytoplankton blooms. Its presence is particularly noted in temperate and tropical marine ecosystems, where it plays a significant role in the cycling of organic matter and nutrients. In these marine biomes, Erythrobacter colymbi exhibits phototrophic capabilities, allowing it to utilize light energy for growth, which is crucial in nutrient-poor waters. This adaptation enables it to occupy a unique ecological niche, where it can outcompete other microorganisms for resources. Furthermore, Erythrobacter colymbi is known to engage in symbiotic relationships with various marine organisms, contributing to the health of coral reefs and other marine habitats. Its interactions with phytoplankton not only enhance primary productivity but also influence the overall dynamics of the marine food web. Overall, Erythrobacter colymbi is an essential component of its marine biome, contributing to nutrient cycling, energy flow, and the maintenance of ecological balance in its environment.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Erythrobacter colymbi has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where Erythrobacter colymbi is utilized for its ability to perform photosynthesis, which can be harnessed for the production of bioactive compounds. This capability allows for the development of sustainable methods to produce valuable metabolites, such as carotenoids, which have applications in food and cosmetic industries due to their antioxidant properties. In the realm of waste management, Erythrobacter colymbi has been studied for its role in biodegradation processes. This organism can contribute to the breakdown of organic pollutants in aquatic environments, making it a candidate for bioremediation strategies aimed at cleaning up contaminated water bodies. Its ability to metabolize various organic compounds can help in reducing the environmental impact of industrial waste. Furthermore, Erythrobacter colymbi has potential applications in biofuel production. By leveraging its photosynthetic capabilities, researchers are exploring ways to utilize this microorganism in the production of biofuels, particularly through the conversion of sunlight into chemical energy, which can be stored in the form of biofuels. This aligns with the growing demand for renewable energy sources and the reduction of carbon footprints. In pharmaceutical development, the metabolic pathways of Erythrobacter colymbi are of interest for the synthesis of novel compounds that may have therapeutic effects. The organism's unique enzymatic activities can be explored for the production of pharmaceuticals, particularly those derived from natural sources. Overall, Erythrobacter colymbi presents a versatile platform for various industrial applications, particularly in biotechnology, waste management, biofuel production, and pharmaceutical development, showcasing its potential to contribute to sustainable industrial practices.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	mistralai/mistral-7b-instruct	anthropic/claude-3.5-sonnet	google/gemma-7b-it	meta-llama/llama-3-70b-instruct:nitro	google/gemini-flash-1.5	meta-llama/llama-3-8b-instruct:nitro	openchat/openchat-7b	anthropic/claude-3-haiku:beta	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4	openai/gpt-4	openai/gpt-4o	openai/gpt-4o	google/gemini-pro	google/gemini-pro	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	FALSE	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerotolerant ✗	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	false	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	false	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	false	false	true	true	true	true	false	false	false	false	true	true	false	false	true	true	true	true	true	true	true	true	false	false
Host association	FALSE	true ✗	false ✓	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗

Back to Search