Diaminobutyricimonas aerilata

General Information

Diaminobutyricimonas aerilata is a fascinating microorganism that has garnered attention due to its unique biochemical capabilities and ecological niche. This bacterium was first isolated from an air sample, which underscores its ability to survive in diverse and potentially harsh environments. One of the most intriguing aspects of D. aerilata is its production of diaminobutyric acid, a non-proteinogenic amino acid that plays a role in various metabolic pathways. This characteristic not only makes it a subject of interest for biochemical studies but also suggests potential applications in biotechnology, particularly in the synthesis of novel compounds. Another notable feature of Diaminobutyricimonas aerilata is its phylogenetic placement within the family Dermacoccaceae. This family includes several other bacteria known for their resilience and adaptability, which may provide insights into the evolutionary strategies employed by D. aerilata to thrive in airborne environments. Additionally, the genomic analysis of this bacterium has revealed several genes associated with stress response and survival, further highlighting its robustness. From a research perspective, D. aerilata offers a valuable model for studying microbial life in aerobiomes and the mechanisms underlying microbial dispersal through the air. Its ability to produce unique biochemical compounds also opens up avenues for exploring new biotechnological applications, making it a microorganism of significant interest in both environmental microbiology and applied sciences.

Diaminobutyricimonas aerilata is a fascinating member of the microbial world, notable for its unique metabolic capabilities. This organism is particularly interesting due to its ability to utilize diaminobutyric acid as a sole carbon and nitrogen source, which is a rare trait among bacteria. This metabolic versatility allows D. aerilata to thrive in environments where other microorganisms may struggle, making it a potential candidate for biotechnological applications, especially in bioremediation processes where specific substrates are present. One of the most intriguing aspects of D. aerilata is its ecological role in the nitrogen cycle. By participating in the degradation of amino acids, it contributes to the recycling of nitrogen in various ecosystems, which is essential for maintaining soil health and fertility. This characteristic positions D. aerilata as a valuable organism for studies focused on nutrient cycling and soil microbiology. Furthermore, the organism's ability to survive in diverse environmental conditions, including varying pH levels and temperatures, makes it a subject of interest for researchers studying extremophiles and microbial resilience. Understanding the genetic and biochemical pathways that enable D. aerilata to adapt to such conditions could provide insights into microbial evolution and potential applications in industrial processes. In summary, Diaminobutyricimonas aerilata stands out due to its unique metabolic capabilities, ecological significance in nitrogen cycling, and resilience in diverse environments, making it a valuable organism for both ecological studies and biotechnological applications.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Micrococcales

Family: Microbacteriaceae

Genus: Diaminobutyricimonas

Species: Diaminobutyricimonas aerilata

NCBI ID

1162967

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/797/715/GCF_002797715.1_ASM279771v1

File for sequence-based predictions:
GCF_002797715.1_ASM279771v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Diaminobutyricimonas aerilata is a relatively newly identified member of the gut microbiota, and its clinical implications are still being explored. It is primarily associated with the human gastrointestinal tract, where it plays a role in the fermentation of dietary fibers and the production of short-chain fatty acids (SCFAs), which are beneficial for gut health and may influence immune responses. Emerging research suggests that Diaminobutyricimonas aerilata may have a role in maintaining intestinal homeostasis and could potentially be linked to the prevention of certain gastrointestinal disorders. However, its specific pathogenicity and association with diseases are not yet well-documented. There is a growing interest in the potential of this organism as a probiotic, given its metabolic capabilities and the positive effects of SCFAs on the gut microbiome. Further studies are needed to elucidate its interactions with other gut microbes and its overall impact on human health. Currently, there is limited information regarding antimicrobial resistance mechanisms associated with Diaminobutyricimonas aerilata, and it has not been implicated in any known outbreaks or severe infections. As research progresses, its role in immune evasion and potential therapeutic applications may become clearer.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Diaminobutyricimonas aerilata is a microorganism primarily associated with aerobic environments and is often found in soil and freshwater ecosystems. This organism thrives in nutrient-rich conditions, particularly where organic matter is abundant, allowing it to play a significant role in the decomposition process. Its ability to metabolize various organic compounds contributes to nutrient cycling within these biomes, making it an essential player in maintaining soil health and fertility. In freshwater habitats, Diaminobutyricimonas aerilata can be found in sediments and biofilms, where it interacts with other microorganisms, forming complex communities. These interactions can include symbiotic relationships with plants, aiding in nutrient uptake, and contributing to the overall productivity of the ecosystem. The organism exhibits remarkable environmental adaptation, allowing it to withstand fluctuations in oxygen levels and nutrient availability. This adaptability enables it to occupy various ecological niches, from aerobic zones in sediments to more dynamic environments influenced by organic runoff. Overall, Diaminobutyricimonas aerilata is a vital component of its ecosystems, contributing to biogeochemical cycles and enhancing the resilience of the habitats it occupies.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Diaminobutyricimonas aerilata has shown potential in various industrial applications primarily due to its unique metabolic capabilities. One of the notable areas is in biotechnology, where it can be utilized in fermentation processes to produce valuable metabolites. This organism is capable of utilizing a range of substrates, making it a candidate for the production of organic acids and other biochemicals. In the realm of waste management, Diaminobutyricimonas aerilata has demonstrated effectiveness in biodegradation processes, particularly in the breakdown of complex organic materials. This ability can be harnessed for the treatment of wastewater, where the microorganism can help in the reduction of pollutants and the enhancement of nutrient cycling. Furthermore, its enzymatic activity is of interest in biofuel production. The organism may contribute to the conversion of biomass into biofuels through enzymatic hydrolysis, facilitating the breakdown of lignocellulosic materials into fermentable sugars, which can then be converted into ethanol or other biofuels. In pharmaceutical development, the metabolic products of Diaminobutyricimonas aerilata could be explored for their potential therapeutic properties, although this area requires further research to establish specific applications. Overall, the versatility of Diaminobutyricimonas aerilata in these industrial sectors highlights its significance in advancing sustainable practices and innovative solutions.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	google/gemini-flash-1.5	anthropic/claude-3.5-sonnet	google/gemma-7b-it	mistralai/mistral-7b-instruct	meta-llama/llama-3-70b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	anthropic/claude-3-haiku:beta	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	google/gemini-pro	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	FALSE	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Gram staining	gram stain positive	gram stain negative ✗	gram stain positive ✓	gram stain negative ✗	gram stain variable ✗	gram stain negative ✗	gram stain negative ✗	gram stain negative ✗	gram stain negative ✗	N/A	gram stain negative ✗	N/A	gram stain negative ✗	N/A	gram stain negative ✗	N/A	gram stain positive ✓	N/A	gram stain negative ✗	N/A	gram stain negative ✗	N/A	gram stain negative ✗	N/A	gram stain negative ✗	N/A	gram stain negative ✗	N/A	gram stain variable ✗
Aerophilicity	aerobic	N/A	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	anaerobic ✗	anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗
Biofilm formation	N/A	true	false	true	true	true	true	true	true	true	true	false	false	true	true	false	false	false	false	false	false	true	true	false	false	true	true	true	true
Animal pathogenicity	N/A	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	true	true	false	false	false	false	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	false	false	false	true	true	false	false	true	true	false	false	false	false	false	false	true	true	false	false	false	false	false	false	false	false	true	true
Host association	N/A	true	false	false	true	true	true	false	false	true	true	false	false	false	false	false	false	true	true	false	false	false	false	false	false	false	false	true	true
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗

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