Streptomyces pratensis

General Information

Streptomyces pratensis is a fascinating microorganism belonging to the genus Streptomyces, which is renowned for its prolific production of secondary metabolites. One of the most notable characteristics of S. pratensis is its ability to produce a wide array of antibiotics and other bioactive compounds. This makes it a valuable organism in the field of biotechnology and pharmaceutical research. Streptomyces species are well-known for their complex life cycle, which includes the formation of a mycelium and spore chains, contributing to their unique morphology. The genus Streptomyces is also distinguished by its high G+C content in its DNA, which is a hallmark of its genetic robustness and adaptability. From a research perspective, S. pratensis is particularly interesting due to its potential in bioremediation. It has been studied for its ability to degrade various environmental pollutants, making it a candidate for cleaning up contaminated sites. Additionally, the metabolic pathways of S. pratensis are of great interest for synthetic biology applications, where its genetic machinery can be harnessed to produce novel compounds. In summary, Streptomyces pratensis stands out due to its antibiotic production capabilities, environmental resilience, and potential applications in bioremediation and synthetic biology. These attributes make it a valuable subject of study in multiple scientific disciplines.

Streptomyces pratensis is a fascinating actinobacterium known for its remarkable ability to produce a variety of bioactive compounds, including antibiotics and antifungal agents. This organism is particularly interesting due to its ecological role in soil environments, where it contributes to the decomposition of organic matter and the cycling of nutrients. Its ability to synthesize secondary metabolites makes it a valuable resource in pharmaceutical research, as many compounds derived from Streptomyces species have been used in the development of clinically important drugs, such as streptomycin and tetracycline. One of the unique aspects of S. pratensis is its potential for biocontrol applications. It has been shown to exhibit antagonistic activity against various plant pathogens, which positions it as a candidate for sustainable agricultural practices. The exploration of its genome has revealed insights into the biosynthetic pathways of its secondary metabolites, which can lead to the discovery of novel compounds with therapeutic potential. Additionally, Streptomyces pratensis is of interest in the field of biotechnology, where researchers are investigating its metabolic capabilities for the production of enzymes and other valuable bioproducts. Its adaptability to different environmental conditions further enhances its potential for industrial applications. Overall, S. pratensis stands out as a significant organism in microbiology, with implications for medicine, agriculture, and biotechnology.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Kitasatosporales

Family: Streptomycetaceae

Genus: Streptomyces

Species: Streptomyces pratensis

NCBI ID

1169025

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/016/804/005/GCA_016804005.1_ASM1680400v1

File for sequence-based predictions:
GCA_016804005.1_ASM1680400v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Streptomyces pratensis is a member of the genus Streptomyces, which is known for its significant role in the production of antibiotics and other bioactive compounds. While S. pratensis itself is not commonly associated with human disease, its relatives are well-documented for their antimicrobial properties. This organism contributes to the microbial diversity in soil and has potential applications in agriculture and medicine. In terms of human health, S. pratensis may play a role in the development of probiotics, as some strains of Streptomyces have been studied for their beneficial effects on gut health. However, the specific clinical applications of S. pratensis in this context remain under investigation. One of the notable aspects of Streptomyces species is their ability to produce a wide range of secondary metabolites, which can include antibiotics that combat various bacterial infections. This characteristic makes them a focus of research in the field of antimicrobial resistance, as they may provide leads for new therapeutic agents against resistant strains of bacteria. Furthermore, the interaction of S. pratensis with the human immune system is not well characterized, but it is hypothesized that certain metabolites may influence immune responses positively. Understanding these interactions could lead to novel therapeutic strategies. Overall, while Streptomyces pratensis itself may not be directly linked to specific diseases or infections, its potential in antibiotic production, probiotic development, and contributions to microbial ecology highlight its relevance in clinical and environmental contexts.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Streptomyces pratensis is a species of soil-dwelling bacteria that thrives primarily in terrestrial ecosystems, particularly in grasslands and agricultural fields. This microorganism is commonly found in the rhizosphere, where it plays a crucial role in promoting plant health and soil fertility. Its ability to produce a variety of bioactive compounds contributes to its significance in these environments. In the grassland biome, Streptomyces pratensis interacts with plant roots, forming beneficial relationships that enhance nutrient uptake and provide protection against pathogens. This symbiotic relationship is vital for maintaining the health of the ecosystem, as it supports plant growth and contributes to the overall biodiversity of the area. Additionally, Streptomyces pratensis is known for its role in decomposition processes, breaking down organic matter and recycling nutrients back into the soil. This function is essential for sustaining the productivity of agricultural fields, where it helps to improve soil structure and fertility. Overall, Streptomyces pratensis exemplifies the intricate connections within soil ecosystems, highlighting its importance in nutrient cycling, plant health, and ecological balance.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Streptomyces pratensis has shown significant potential in various industrial applications due to its unique metabolic capabilities and enzymatic activities. One of the primary areas of interest is in biotechnology, where Streptomyces pratensis is utilized for its ability to produce a wide range of bioactive compounds, including antibiotics and enzymes. These compounds are crucial in the development of pharmaceuticals, particularly in the production of natural antibiotics that can combat resistant bacterial strains. In the realm of waste management, Streptomyces pratensis has demonstrated effectiveness in biodegradation processes. This organism can break down complex organic materials, making it valuable in the treatment of agricultural and industrial waste. Its ability to degrade pollutants contributes to environmental sustainability by reducing toxic waste in soil and water. Moreover, Streptomyces pratensis plays a role in biofuel production. Through fermentation processes, it can convert biomass into biofuels, providing a renewable energy source. The metabolic pathways utilized by this microorganism can enhance the efficiency of biofuel production, making it a candidate for further research in sustainable energy solutions. Overall, the diverse capabilities of Streptomyces pratensis in pharmaceutical development, biodegradation, and biofuel production highlight its importance in various industries, showcasing its potential as a valuable tool in modern biotechnology and environmental management.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	google/gemini-pro-1.5	google/gemini-pro	google/gemma-7b-it	mistralai/mixtral-8x7b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	anthropic/claude-3-haiku:beta	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	google/gemini-flash-1.5	google/gemini-flash-1.5	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-4o	openai/gpt-4o	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct
Motility	FALSE	true ✗	false ✓	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain variable ✗	N/A	gram stain variable ✗
Aerophilicity	aerobic	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A
Extreme environment tolerance	N/A	true	false	true	true	true	false	false	true	true	true	true	true	false	false	false	false	false	false	true	true	true	true	false	false	true	true	true	true
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 3 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	true	true	true	true	false	false	false	false	false	false	true	true	true	true	true	true	true	true	true	true	false	false	false	false
Host association	FALSE	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Hemolysis	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	gamma	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	tail	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗

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