Pseudomonas asturiensis

General Information

Pseudomonas asturiensis is a fascinating microorganism belonging to the genus Pseudomonas, which is known for its metabolic diversity and environmental versatility. This species was first isolated from soil in Asturias, Spain, and has since garnered interest for several reasons. One of the most intriguing aspects of Pseudomonas asturiensis is its potential for bioremediation. Like many other Pseudomonas species, it has the ability to degrade a variety of organic pollutants, making it a valuable candidate for cleaning up contaminated environments. This capability is particularly important in the context of increasing industrial pollution and the need for sustainable environmental management practices. Additionally, Pseudomonas asturiensis exhibits a unique set of metabolic pathways that allow it to thrive in diverse ecological niches. This metabolic flexibility is not only interesting from a basic science perspective but also holds potential for various biotechnological applications. For instance, its ability to produce secondary metabolites could be harnessed for the development of new antibiotics or other pharmaceutical compounds. Another noteworthy feature of Pseudomonas asturiensis is its interaction with plant roots, which can promote plant growth and health. This plant-microbe interaction is of significant interest in the field of agriculture, where there is a growing demand for natural and sustainable methods to enhance crop yields and resilience against pathogens. In summary, Pseudomonas asturiensis stands out due to its bioremediation potential, metabolic versatility, and beneficial plant interactions. These characteristics make it a valuable subject for ongoing research in environmental science, biotechnology, and agriculture.

Pseudomonas asturiensis is a fascinating bacterium that was first isolated from a soil sample in the Asturias region of Spain. This organism is particularly interesting due to its metabolic versatility, which allows it to thrive in a variety of environments, including those contaminated with organic pollutants. Its ability to degrade complex hydrocarbons makes it a valuable candidate for bioremediation efforts, where it can be utilized to clean up oil spills and other environmental contaminants. One of the unique features of Pseudomonas asturiensis is its production of extracellular enzymes, which play a crucial role in breaking down complex organic materials. This enzymatic activity not only aids in its survival in nutrient-poor environments but also contributes to its potential applications in industrial processes, such as waste treatment and the production of biofuels. Additionally, this species exhibits a remarkable resilience to harsh conditions, including the presence of heavy metals and extreme pH levels, which further enhances its utility in environmental biotechnology. The genetic and biochemical pathways that enable these adaptations are of significant interest to researchers, as they may provide insights into microbial survival strategies and the development of engineered strains for specific applications. Overall, Pseudomonas asturiensis stands out as a promising organism for both ecological and industrial research, highlighting the importance of soil microorganisms in maintaining environmental health and advancing biotechnological innovations.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas asturiensis

NCBI ID

1190415

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/452/745/GCA_000452745.3_ASM45274v3

File for sequence-based predictions:
GCA_000452745.3_ASM45274v3_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas asturiensis is a member of the Pseudomonas genus, which is known for its environmental versatility and clinical significance. While specific studies on Pseudomonas asturiensis are limited, its close relatives, particularly Pseudomonas aeruginosa, provide insight into potential clinical implications. This organism may be associated with opportunistic infections, particularly in immunocompromised patients or those with underlying health conditions. It can be involved in respiratory infections, wound infections, and urinary tract infections, similar to its more pathogenic relatives. One of the notable features of Pseudomonas species is their ability to develop antimicrobial resistance. This resistance is often attributed to their intrinsic mechanisms, such as the production of beta-lactamases and the presence of efflux pumps, which can expel a wide range of antibiotics. This poses a significant challenge in clinical settings, as infections caused by these organisms can be difficult to treat and may require the use of last-resort antibiotics. In terms of immune evasion, Pseudomonas species can produce biofilms, which protect them from both the host immune response and antibiotic treatment. This characteristic is particularly concerning in patients with indwelling medical devices or chronic wounds, where biofilm formation can lead to persistent infections. While Pseudomonas asturiensis itself may not have been directly implicated in major outbreaks, its relatives have been associated with nosocomial infections, highlighting the importance of monitoring and understanding the epidemiology of this genus. Further research is needed to fully elucidate the clinical relevance of Pseudomonas asturiensis, but its potential role in human health and disease cannot be overlooked.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas asturiensis is a versatile bacterium commonly found in various habitat types that reflect its ecological adaptability. This microorganism thrives in soil ecosystems, particularly in nutrient-rich environments where organic matter is abundant. Its presence is often associated with agricultural soils, where it plays a crucial role in the decomposition of organic materials, thus contributing to nutrient cycling and soil health. In addition to terrestrial environments, Pseudomonas asturiensis has been documented in aquatic habitats, including freshwater systems. Here, it participates in the breakdown of pollutants, showcasing its potential as a bioremediator. This ability to degrade various organic compounds highlights its importance in maintaining the ecological balance and improving water quality. Furthermore, Pseudomonas asturiensis exhibits notable interactions with its surroundings, particularly in symbiotic relationships with plants. It can enhance plant growth by promoting nutrient uptake and providing protection against certain pathogens. This mutualistic interaction underscores its role in agroecosystems, where it can improve crop yields and resilience. Overall, Pseudomonas asturiensis is a key player in both terrestrial and aquatic biomes, contributing to nutrient cycling, pollution degradation, and plant health, making it an essential component of the ecosystems it inhabits.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas asturiensis has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where Pseudomonas asturiensis is utilized for its ability to produce enzymes that can be harnessed in biocatalysis processes. These enzymes are valuable in the production of biofuels, as they can facilitate the breakdown of complex organic materials into simpler compounds that can be fermented into ethanol or other biofuels. In the realm of waste management, Pseudomonas asturiensis has demonstrated capabilities in biodegradation, particularly in the breakdown of pollutants and toxic compounds in contaminated environments. This makes it a candidate for use in bioremediation strategies, where it can help in the detoxification of hazardous waste sites, thus contributing to environmental sustainability. Furthermore, the organism's metabolic versatility allows it to thrive in diverse conditions, making it suitable for pharmaceutical development. It can be involved in the production of secondary metabolites that may have therapeutic properties, which can be explored for drug development. Overall, Pseudomonas asturiensis exemplifies the potential of microorganisms in enhancing industrial processes through fermentation, enzyme production, and waste treatment, making it a valuable asset in modern biotechnology and environmental management.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	anthropic/claude-3-haiku:beta	google/gemini-flash-1.5	mistralai/mixtral-8x7b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	google/gemma-7b-it	google/gemma-7b-it	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4	openai/gpt-4	openai/gpt-4o	openai/gpt-4o	google/gemini-pro	google/gemini-pro	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	false	true	true	false	true	true	false	true	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	true	true	true	false	true	true	false	false	true	true	true	true	false	false	false	false	true	true	true	true	true	true	false	false
Host association	FALSE	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	N/A	true	false	true	false	false	false	false	false	false	false	false	false	true	true	false	false	false	false	false	false	true	true	false	false	false	false	false	false
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	alpha	N/A	N/A	N/A	N/A	N/A	alpha	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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