Pseudoalteromonas shioyasakiensis

General Information

Pseudoalteromonas shioyasakiensis is a marine bacterium that has garnered attention due to its unique biochemical capabilities and ecological roles. This microorganism is part of the Pseudoalteromonas genus, which is known for producing a variety of bioactive compounds. One of the most intriguing aspects of P. shioyasakiensis is its ability to produce extracellular enzymes that can degrade complex organic materials, making it a valuable candidate for biotechnological applications, particularly in the field of bioremediation. Additionally, P. shioyasakiensis has been studied for its potential in the production of antimicrobial substances. These compounds can inhibit the growth of other marine microorganisms, suggesting a role in natural marine microbial community dynamics and offering potential for the development of new antibiotics. From an ecological perspective, P. shioyasakiensis contributes to nutrient cycling in marine environments. Its enzymatic activities help break down organic matter, facilitating the recycling of nutrients and supporting the marine food web. This makes it an important player in maintaining the health and balance of marine ecosystems. In summary, Pseudoalteromonas shioyasakiensis is a fascinating microorganism due to its biotechnological potential, production of bioactive compounds, and ecological significance. Its study not only advances our understanding of marine microbiology but also opens up new avenues for practical applications in environmental and medical fields.

Pseudoalteromonas shioyasakiensis is a marine bacterium that has garnered interest due to its unique ecological niche and potential biotechnological applications. Isolated from the coastal waters of Japan, this organism thrives in saline environments, showcasing its adaptability to extreme conditions. One of the most fascinating aspects of P. shioyasakiensis is its ability to produce a variety of bioactive compounds, including antimicrobial substances that can inhibit the growth of pathogenic bacteria. This characteristic makes it a valuable candidate for research in natural product chemistry and the development of new antibiotics, especially in an era where antibiotic resistance is a growing concern. Additionally, P. shioyasakiensis has been studied for its role in marine ecosystems, particularly in nutrient cycling and interactions with other marine organisms. Its production of exopolysaccharides contributes to the formation of biofilms, which are crucial for the stability of marine habitats. The organism's metabolic versatility allows it to utilize a range of organic compounds, making it an interesting subject for studies on microbial ecology and bioremediation. Furthermore, the genomic analysis of P. shioyasakiensis has revealed insights into its genetic adaptations to marine life, including genes associated with stress response and secondary metabolite production. This genomic information can aid in understanding the evolutionary mechanisms that enable survival in fluctuating marine environments. Overall, Pseudoalteromonas shioyasakiensis stands out as a promising organism for both ecological studies and biotechnological innovations.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Alteromonadales

Family: Pseudoalteromonadaceae

Genus: Pseudoalteromonas

Species: Pseudoalteromonas shioyasakiensis

NCBI ID

1190813

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/134/595/GCA_019134595.1_ASM1913459v1

File for sequence-based predictions:
GCA_019134595.1_ASM1913459v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudoalteromonas shioyasakiensis is a marine bacterium that has garnered attention for its potential biotechnological applications and its role in marine ecosystems. While it is not primarily associated with human disease, its relevance in clinical settings stems from its production of bioactive compounds, which may have antimicrobial and antiviral properties. These compounds could be explored for their potential use in developing new therapeutics or probiotics. In terms of pathogenicity, there is limited documentation linking Pseudoalteromonas shioyasakiensis to human infections. However, its close relatives within the genus Pseudoalteromonas have been implicated in opportunistic infections, particularly in immunocompromised individuals. This raises questions about the potential for immune evasion strategies that may be present in this species, although specific mechanisms remain to be elucidated. Furthermore, the organism's ability to produce enzymes and other metabolites may contribute to its ecological niche, influencing microbial community dynamics in marine environments. Understanding these interactions could provide insights into its role in human health through the study of marine-derived compounds that may benefit gut microbiota or enhance immune responses. Overall, while Pseudoalteromonas shioyasakiensis is not a well-documented pathogen, its potential applications in medicine and its ecological significance warrant further investigation.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudoalteromonas shioyasakiensis is a marine bacterium primarily found in coastal waters and marine sediments. This organism thrives in environments characterized by high salinity and nutrient availability, often associated with mangrove ecosystems and coral reefs. Its ecological niche is significant as it plays a role in the degradation of organic matter, contributing to nutrient cycling within these biomes. In the marine ecosystem, Pseudoalteromonas shioyasakiensis exhibits symbiotic relationships with various marine organisms, including corals and sponges. These interactions can enhance the health of the host organisms by providing essential nutrients and aiding in the defense against pathogens. The bacterium is also known for its ability to produce bioactive compounds, which can have antimicrobial properties, thus influencing the microbial community structure in its habitat. Furthermore, this microorganism demonstrates remarkable environmental adaptation capabilities, allowing it to survive in fluctuating conditions typical of coastal environments. Its presence is often indicative of a healthy marine ecosystem, as it contributes to the overall biodiversity and stability of the habitat. Overall, Pseudoalteromonas shioyasakiensis is an integral component of the marine biome, showcasing the intricate relationships and functions of microorganisms in sustaining ecological balance.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudoalteromonas shioyasakiensis has shown significant potential in various industrial applications. This marine bacterium is particularly noted for its role in biotechnology, where it is involved in the production of bioactive compounds, including antimicrobial and antifouling agents. These compounds can be harnessed in the development of new pharmaceuticals and coatings, making Pseudoalteromonas shioyasakiensis a valuable resource in the pharmaceutical development sector. In the realm of waste management, Pseudoalteromonas shioyasakiensis has demonstrated capabilities in biodegradation, particularly in the breakdown of complex organic materials. This property can be utilized in the treatment of wastewater and the remediation of contaminated environments, contributing to more sustainable waste management practices. Furthermore, this microorganism is being explored for its potential in biofuel production. Through fermentation processes, Pseudoalteromonas shioyasakiensis can convert organic substrates into biofuels, offering an alternative energy source that is more environmentally friendly compared to fossil fuels. Overall, the diverse applications of Pseudoalteromonas shioyasakiensis in biotechnology, waste management, and biofuel production highlight its importance in advancing industrial processes and promoting sustainability.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	google/gemini-flash-1.5	meta-llama/llama-3-8b-instruct:nitro	google/gemini-pro	meta-llama/llama-3-70b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	anthropic/claude-3.5-sonnet	anthropic/claude-3-haiku:beta	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4	openai/gpt-4	google/gemini-pro-1.5	google/gemini-pro-1.5	google/gemma-7b-it	google/gemma-7b-it	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-4o	openai/gpt-4o
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	N/A	aerotolerant ✗	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	false	false	true	false	true	false	true	true	false	false	true	true	true	true	false	false	false	false	false	false	true	true	true	true	true	true
Host association	FALSE	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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