Stutzerimonas kunmingensis

General Information

Stutzerimonas kunmingensis is a fascinating microorganism that has garnered attention due to its unique metabolic capabilities and potential applications in biotechnology. This bacterium was originally isolated from soil samples in Kunming, China, which hints at its adaptability to diverse environmental conditions. One of the most intriguing aspects of S. kunmingensis is its ability to degrade a variety of complex organic compounds. This makes it a valuable candidate for bioremediation efforts, particularly in environments contaminated with pollutants such as hydrocarbons and heavy metals. The metabolic pathways employed by S. kunmingensis are of significant interest to researchers aiming to understand and harness these processes for environmental cleanup. Additionally, S. kunmingensis has shown potential in the field of agriculture. Its ability to promote plant growth through the production of phytohormones and other growth-promoting substances could be leveraged to enhance crop yields and reduce the need for chemical fertilizers. This symbiotic relationship with plants underscores the bacterium's ecological importance and its potential utility in sustainable farming practices. From a genetic perspective, S. kunmingensis possesses a genome that encodes a variety of enzymes and regulatory proteins, which are crucial for its versatile metabolic functions. The study of these genetic elements can provide insights into microbial adaptation and resilience, offering broader implications for microbial ecology and evolutionary biology. In summary, Stutzerimonas kunmingensis stands out due to its bioremediation potential, agricultural applications, and genetic versatility. These characteristics make it a subject of ongoing research with promising implications for environmental and agricultural biotechnology.

Stutzerimonas kunmingensis is a fascinating bacterium that belongs to the genus Stutzerimonas, which is known for its unique ecological niches and metabolic capabilities. This species was first isolated from a freshwater environment in Kunming, China, highlighting its adaptability to diverse habitats. One of the most interesting aspects of S. kunmingensis is its ability to degrade various organic compounds, making it a potential candidate for bioremediation applications. This characteristic is particularly valuable in environmental microbiology, where the need for effective methods to clean up contaminated sites is ever-increasing. The metabolic versatility of S. kunmingensis allows it to utilize a range of substrates, which not only contributes to its survival in fluctuating environments but also positions it as a model organism for studying microbial metabolism. Research into this species can provide insights into the mechanisms of organic compound degradation, which is crucial for understanding nutrient cycling in ecosystems. Furthermore, S. kunmingensis has been noted for its potential in biotechnology, particularly in the development of bio-based processes for waste treatment and resource recovery. Its unique enzymatic pathways could be harnessed for industrial applications, making it a valuable organism for future research in sustainable practices. Overall, Stutzerimonas kunmingensis stands out as a promising subject for studies focused on environmental sustainability and microbial ecology.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Stutzerimonas

Species: Stutzerimonas kunmingensis

NCBI ID

1211807

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/432/085/GCA_021432085.1_ASM2143208v1

File for sequence-based predictions:
GCA_021432085.1_ASM2143208v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The bacterium Stutzerimonas kunmingensis is a member of the family Comamonadaceae and has been associated with various clinical implications, particularly in the context of infections and its role in human health. This organism has been isolated from clinical specimens, indicating its potential pathogenicity. Infections caused by Stutzerimonas kunmingensis are relatively rare but can occur in immunocompromised patients, leading to serious health complications. The organism has been linked to respiratory infections and wound infections, highlighting its relevance in clinical microbiology. One of the notable aspects of Stutzerimonas kunmingensis is its potential for antimicrobial resistance. Reports suggest that strains of this bacterium may exhibit resistance to multiple antibiotics, complicating treatment options for infected patients. This resistance can be attributed to various mechanisms, including the production of beta-lactamases and other efflux pumps that expel antibiotics from the bacterial cell, thereby reducing their efficacy. In terms of immune evasion, Stutzerimonas kunmingensis may employ strategies that allow it to survive within the host, such as altering its surface antigens or producing factors that inhibit the immune response. These adaptations can contribute to its persistence in clinical settings and its ability to cause infections in vulnerable populations. While research on Stutzerimonas kunmingensis is still emerging, its identification in clinical samples underscores the importance of monitoring this organism in healthcare settings. Understanding its pathogenic potential and resistance mechanisms is crucial for developing effective treatment strategies and improving patient outcomes.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Stutzerimonas kunmingensis is a bacterium that has been primarily isolated from freshwater environments, particularly in regions with rich organic matter. This organism thrives in aquatic ecosystems where it plays a significant role in the degradation of organic materials, contributing to nutrient cycling within these habitats. Its presence is often associated with sediment layers in lakes and rivers, where it can be found in high concentrations due to its ability to metabolize various organic compounds. In terms of ecological interactions, Stutzerimonas kunmingensis exhibits symbiotic relationships with other microorganisms, particularly in biofilm communities. These interactions enhance the overall stability and functionality of the microbial community, allowing for efficient nutrient exchange and degradation processes. Additionally, this bacterium is known to adapt to varying oxygen levels, demonstrating its versatility in both aerobic and anaerobic conditions. Overall, Stutzerimonas kunmingensis is an important player in freshwater biomes, contributing to the health and sustainability of these ecosystems through its metabolic activities and interactions with other microbial life.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Stutzerimonas kunmingensis has shown significant potential in various industrial applications. One of the most notable areas is in biotechnology, where it is utilized for its ability to degrade complex organic compounds, making it valuable in waste management processes. This organism can effectively break down pollutants in wastewater, contributing to the purification of contaminated environments. In the realm of biofuel production, Stutzerimonas kunmingensis has been studied for its capacity to ferment organic materials, leading to the generation of bioethanol. This process involves fermentation, where the microorganism converts sugars into alcohol, providing a renewable energy source that can help reduce reliance on fossil fuels. Additionally, Stutzerimonas kunmingensis has potential applications in pharmaceutical development. Its unique metabolic pathways can be harnessed for the production of bioactive compounds, which may serve as precursors for drug synthesis. The organism's enzymatic activity is particularly noteworthy, as it can produce specific enzymes that are useful in various biochemical reactions. Overall, the versatility of Stutzerimonas kunmingensis in biodegradation, fermentation, and enzyme production highlights its importance in advancing sustainable practices across multiple industries.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	mistralai/mixtral-8x7b-instruct:nitro	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	anthropic/claude-3-haiku:beta	mistralai/mistral-7b-instruct	meta-llama/llama-3-70b-instruct:nitro	google/palm-2-chat-bison-32k	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	microsoft/wizardlm-2-8x22b	google/gemma-7b-it	google/gemma-7b-it	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	google/gemini-pro	google/gemini-pro	google/gemini-flash-1.5	google/gemini-flash-1.5	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	openai/gpt-4	openai/gpt-4	openai/gpt-4o	openai/gpt-4o
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	facultatively anaerobic ✗	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	false	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true
Animal pathogenicity	N/A	false	false	false	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	false	false	true	false	true	true	true	false	true	true	true	false	false	false	false	true	true	false	false	false	false	false	false	false	false
Host association	N/A	true	false	false	true	true	true	false	true	false	false	false	false	false	false	false	false	true	true	false	false	false	false	false	false	false	false
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	N/A	alpha	N/A	N/A	N/A	N/A	N/A	N/A	alpha	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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