Paraburkholderia strydomiana

General Information

Paraburkholderia strydomiana is a fascinating microorganism that belongs to the genus Paraburkholderia, which is known for its diverse metabolic capabilities and environmental versatility. One of the most intriguing aspects of P. strydomiana is its ability to thrive in a variety of ecological niches, including soil and plant-associated environments. This adaptability makes it a valuable subject for studies on microbial ecology and symbiosis. One of the key characteristics of P. strydomiana is its potential for bioremediation. Members of the Paraburkholderia genus are known for their ability to degrade a wide range of environmental pollutants, including aromatic compounds and heavy metals. This makes P. strydomiana particularly interesting for research focused on environmental cleanup and sustainable practices. Additionally, P. strydomiana has been observed to engage in beneficial interactions with plants, promoting plant growth and health. This plant-growth-promoting trait is of significant interest in agricultural research, as it could lead to the development of biofertilizers and sustainable agricultural practices. From a genomic perspective, P. strydomiana possesses a complex and versatile genome that encodes a variety of enzymes and metabolic pathways. This genetic diversity underpins its ability to adapt to different environments and utilize a wide range of substrates. Researchers are particularly interested in exploring its genome to uncover novel genes and pathways that could have biotechnological applications. In summary, Paraburkholderia strydomiana is a microorganism of considerable interest due to its environmental versatility, bioremediation potential, and plant-growth-promoting abilities. Its study not only enhances our understanding of microbial ecology and symbiosis but also holds promise for practical applications in environmental and agricultural biotechnology.

Paraburkholderia strydomiana is a fascinating bacterium that has garnered attention due to its unique ecological niche and potential applications in biotechnology. This species is part of the Burkholderia genus, which is known for its diverse metabolic capabilities and interactions with various environments, particularly in soil and plant systems. One of the most interesting aspects of P. strydomiana is its ability to thrive in extreme conditions, which makes it a subject of interest for researchers studying extremophiles and their adaptations. The organism has been isolated from specific environments, indicating its role in nutrient cycling and possibly in plant growth promotion. Its potential for bioremediation is particularly noteworthy, as it may be capable of degrading pollutants or facilitating the breakdown of complex organic compounds in contaminated sites. This characteristic positions P. strydomiana as a valuable candidate for environmental cleanup efforts. Additionally, the metabolic versatility of P. strydomiana allows it to utilize a wide range of substrates, which can be harnessed in industrial applications, such as the production of biofuels or bioplastics. The study of this microorganism could lead to significant advancements in sustainable practices and environmental management. Overall, Paraburkholderia strydomiana represents a promising area of research with implications for ecology, biotechnology, and environmental science.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Betaproteobacteria

Order: Burkholderiales

Family: Burkholderiaceae

Genus: Paraburkholderia

Species: Paraburkholderia strydomiana

NCBI ID

1245417

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/612/865/GCA_018612865.1_ASM1861286v1

File for sequence-based predictions:
GCA_018612865.1_ASM1861286v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Paraburkholderia strydomiana has been identified as a member of the Burkholderia genus, which is known for its diverse ecological roles and clinical significance. This organism is particularly relevant in the context of infections associated with immunocompromised patients. It has been isolated from various clinical specimens, indicating its potential as an opportunistic pathogen. Clinical implications include its association with respiratory infections, wound infections, and bacteremia, especially in individuals with underlying health conditions such as cystic fibrosis or those undergoing immunosuppressive therapy. One of the notable features of Paraburkholderia strydomiana is its antimicrobial resistance profile. Members of the Burkholderia genus are often resistant to multiple classes of antibiotics, which complicates treatment options. This resistance is attributed to various mechanisms, including the production of beta-lactamases and the presence of efflux pumps that expel antibiotics from the bacterial cell, leading to treatment failures in infected patients. In terms of immune evasion, Paraburkholderia strydomiana may employ strategies such as biofilm formation, which protects it from both the host immune response and antibiotic treatment. This characteristic is particularly concerning in chronic infections, where biofilms can lead to persistent and difficult-to-treat infections. While research on Paraburkholderia strydomiana is still emerging, its potential role in outbreaks and its clinical relevance in specific patient populations underscore the need for continued surveillance and study. Understanding its pathogenic mechanisms and resistance patterns is crucial for developing effective therapeutic strategies and improving patient outcomes.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Paraburkholderia strydomiana is a notable bacterium primarily associated with soil ecosystems and plant rhizospheres. This microorganism thrives in a variety of terrestrial habitats, particularly in regions where it can establish symbiotic relationships with plant roots. Its presence is often linked to nutrient-rich soils, where it plays a crucial role in nitrogen fixation, enhancing soil fertility and promoting plant growth. In the rhizosphere, Paraburkholderia strydomiana interacts closely with plant roots, forming beneficial associations that can improve nutrient uptake and stress resistance in plants. This symbiotic relationship is particularly important in agricultural systems, where it can contribute to sustainable farming practices by reducing the need for chemical fertilizers. Additionally, this bacterium is known to inhabit wetlands and mangrove ecosystems, where it contributes to the cycling of nutrients and organic matter. Its ability to adapt to varying moisture levels and salinity conditions allows it to thrive in these dynamic environments, further emphasizing its ecological significance. Overall, Paraburkholderia strydomiana exemplifies the intricate relationships within soil biomes and highlights the importance of microbial communities in maintaining ecosystem health and productivity.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Paraburkholderia strydomiana has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where it is utilized for its ability to produce specific enzymes that can be harnessed in biocatalysis processes. These enzymes can facilitate chemical reactions under mild conditions, making them valuable in the production of pharmaceuticals and other fine chemicals. In the realm of waste management, Paraburkholderia strydomiana has demonstrated capabilities in biodegradation, particularly in the breakdown of complex organic pollutants. This property is crucial for the treatment of contaminated environments, such as soil and water, where the organism can help in the detoxification of hazardous substances. Furthermore, this microorganism is being explored for its role in biofuel production. Through fermentation processes, Paraburkholderia strydomiana can convert biomass into bioethanol, providing a sustainable alternative to fossil fuels. Its metabolic pathways are being studied to enhance yield and efficiency in biofuel generation. In addition to these applications, Paraburkholderia strydomiana is also of interest in pharmaceutical development. Its unique metabolic capabilities may lead to the discovery of novel compounds with therapeutic potential, particularly in the development of antibiotics or other medicinal agents. Overall, the versatility of Paraburkholderia strydomiana positions it as a valuable organism in multiple industrial sectors, contributing to advancements in sustainability and innovation.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	mistralai/mixtral-8x7b-instruct:nitro	anthropic/claude-3-haiku:beta	google/gemini-pro	google/gemma-7b-it	mistralai/mistral-7b-instruct	google/palm-2-chat-bison-32k	meta-llama/llama-3-8b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/gemini-pro-1.5	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	google/gemini-flash-1.5	google/gemini-flash-1.5	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4	openai/gpt-4	openai/gpt-4o	openai/gpt-4o	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	true	true	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	false	false	true	true	true	true	false	false
Host association	N/A	true	true	true	false	true	false	true	true	true	false	false	true	true	false	false	true	true	false	false	false	false	false	false	false	false	false	false
Plant pathogenicity	FALSE	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	gamma	N/A	beta ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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