Vibrio bivalvicida

General Information

Vibrio bivalvicida is a fascinating microorganism primarily known for its association with marine environments, particularly in relation to bivalve mollusks. This bacterium is of significant interest due to its potential impact on aquaculture and marine biology. One of the key characteristics of Vibrio bivalvicida is its ability to interact with and sometimes infect bivalve species, which include economically important shellfish such as oysters, clams, and mussels. This interaction can lead to diseases in these marine organisms, making Vibrio bivalvicida a subject of study for understanding and mitigating shellfish diseases. From a research perspective, Vibrio bivalvicida is valuable for studying host-pathogen interactions in marine environments. Its relationship with bivalves provides insights into the mechanisms of infection and immunity in these organisms. Additionally, the bacterium's adaptability to different marine conditions makes it an interesting model for studying environmental microbiology and the effects of changing ocean conditions on microbial life. Another noteworthy aspect of Vibrio bivalvicida is its genetic makeup, which can offer clues about the evolution of pathogenicity in marine bacteria. Researchers are particularly interested in the genes that enable this bacterium to colonize and infect bivalves, as well as those that confer resistance to environmental stresses. Overall, Vibrio bivalvicida is a microorganism of considerable importance due to its ecological role, its impact on marine aquaculture, and its potential to advance our understanding of marine microbial ecology and pathogenesis.

Vibrio bivalvicida is a fascinating marine bacterium known for its role in the health and disease of bivalve mollusks, particularly oysters and clams. This organism is particularly interesting due to its pathogenicity, which can lead to significant economic losses in aquaculture. The bacterium is capable of causing mass mortality events in bivalve populations, making it a critical subject of study for marine biologists and aquaculture specialists. One of the unique aspects of Vibrio bivalvicida is its adaptation to marine environments, where it thrives in brackish waters. This adaptability allows it to exploit various ecological niches, contributing to its survival and virulence. The organism's ability to produce virulence factors, such as toxins and enzymes, is a key area of research, as these factors play a crucial role in its pathogenic mechanisms. Furthermore, Vibrio bivalvicida serves as a model organism for studying host-pathogen interactions in marine ecosystems. Understanding how this bacterium interacts with its bivalve hosts can provide insights into the broader implications of microbial diseases in aquatic environments. Researchers are particularly interested in the genetic and biochemical pathways that enable Vibrio bivalvicida to infect and proliferate within bivalves, which could lead to the development of effective management strategies in aquaculture. In summary, Vibrio bivalvicida is not only significant due to its impact on bivalve health but also valuable for its contributions to our understanding of marine microbiology and the dynamics of host-pathogen relationships in aquatic systems.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Vibrionales

Family: Vibrionaceae

Genus: Vibrio

Species: Vibrio bivalvicida

NCBI ID

1276888

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/399/455/GCF_001399455.2_ASM139945v2

File for sequence-based predictions:
GCF_001399455.2_ASM139945v2_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The bacterium Vibrio bivalvicida is primarily known for its role in marine environments, particularly in association with bivalve mollusks. It has been implicated in mass mortality events among shellfish, particularly oysters, which can have significant economic impacts on aquaculture. The organism is considered a pathogen for these marine species, leading to infections that can result in high mortality rates. In terms of human health, while Vibrio bivalvicida is not typically associated with direct infections in humans, its presence in contaminated seafood can pose a risk, especially for individuals with compromised immune systems. The bacterium's ability to thrive in brackish waters and its association with shellfish highlight the importance of monitoring and managing seafood safety to prevent potential gastrointestinal infections in humans. Furthermore, the organism's potential for antimicrobial resistance is a growing concern, as it may acquire resistance genes from other bacteria in its environment. This could complicate treatment options for any potential infections that arise from seafood consumption. Overall, while Vibrio bivalvicida is primarily a concern for marine life, its implications for human health through the food chain and its potential for antimicrobial resistance warrant further research and monitoring.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Vibrio bivalvicida is a marine bacterium primarily associated with coastal marine environments and estuarine ecosystems. This microorganism thrives in brackish waters where salinity levels fluctuate, often found in areas with high organic matter and nutrient availability. Its ecological niche is closely linked to the health of bivalve populations, particularly in regions where these organisms are cultivated or harvested. In these marine biomes, Vibrio bivalvicida plays a notable role as a pathogen, particularly affecting mollusks such as clams and oysters. This interaction can lead to significant economic impacts on aquaculture and fisheries. The bacterium is known to cause mass mortality events in bivalve populations, highlighting its importance in the dynamics of marine food webs. Additionally, Vibrio bivalvicida exhibits symbiotic relationships with certain marine organisms, potentially influencing nutrient cycling and energy flow within its habitat. Its ability to adapt to varying salinity and temperature conditions allows it to thrive in diverse environments, making it a key player in the microbial community of coastal waters. Overall, the presence of Vibrio bivalvicida in these biomes underscores the intricate balance of marine ecosystems and the potential consequences of microbial interactions on marine life.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Vibrio bivalvicida has shown significant potential in various industrial applications, particularly in the fields of biotechnology, waste management, and pharmaceutical development. This organism is primarily known for its role in biodegradation, where it can effectively break down organic materials, making it valuable in waste treatment processes. Its ability to degrade complex organic compounds can be harnessed in wastewater treatment, contributing to the reduction of pollutants in aquatic environments. In the realm of biotechnology, Vibrio bivalvicida is involved in fermentation processes, which can be utilized for the production of bioactive compounds. These compounds have potential applications in the development of new pharmaceuticals, particularly in the search for antimicrobial agents. The enzymatic activities of this microorganism can also be explored for the production of enzymes that are useful in various industrial processes, including food processing and bioremediation. Moreover, Vibrio bivalvicida has been studied for its potential in biofuel production. Its metabolic pathways can be optimized to convert biomass into biofuels, providing a sustainable alternative to fossil fuels. The organism's efficiency in utilizing different substrates makes it a candidate for further research in the development of biofuel technologies. Overall, the diverse capabilities of Vibrio bivalvicida in biodegradation, fermentation, and enzyme production highlight its importance in advancing sustainable practices across multiple industries.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	google/gemma-7b-it	meta-llama/llama-3-70b-instruct:nitro	google/gemini-flash-1.5	mistralai/mixtral-8x7b-instruct:nitro	openai/gpt-4	openai/gpt-4	openai/gpt-4o	openai/gpt-4o	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	anthropic/claude-3-haiku:beta	mistralai/mistral-7b-instruct	google/palm-2-chat-bison-32k	meta-llama/llama-3-8b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	microsoft/phi-3-mini-128k-instruct	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/gemini-pro-1.5	google/gemini-pro-1.5	google/gemini-pro	google/gemini-pro	openchat/openchat-7b	openchat/openchat-7b	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Biosafety level	biosafety level 1	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true
Host association	FALSE	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	alpha	beta	beta	N/A	beta	beta	beta	beta	beta	beta	beta	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	spirillum ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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