Micromonospora polyrhachis

General Information

Micromonospora polyrhachis is a fascinating microorganism belonging to the genus Micromonospora, which is well-known for its prolific production of bioactive compounds. This particular species was isolated from the ant Polyrhachis lamellidens, highlighting a unique ecological relationship that underscores its potential for symbiotic interactions. One of the most intriguing aspects of M. polyrhachis is its ability to produce novel antibiotics and other secondary metabolites, which are of significant interest in the field of natural product research and drug discovery. The genus Micromonospora is renowned for its contribution to the development of antibiotics, and M. polyrhachis is no exception. The species has been studied for its potential to yield new antimicrobial agents that could be crucial in the fight against antibiotic-resistant pathogens. Additionally, the unique habitat from which M. polyrhachis was isolated suggests that it may possess unique metabolic pathways and genetic traits that could be harnessed for biotechnological applications. In summary, Micromonospora polyrhachis stands out due to its potential for producing novel bioactive compounds, its interesting ecological niche, and its contribution to the ongoing search for new antibiotics. These characteristics make it a valuable subject for further research in microbiology, natural product chemistry, and biotechnology.*

Micromonospora polyrhachis is a fascinating actinobacterium that has garnered attention due to its unique ecological niche and potential biotechnological applications. This microorganism is primarily isolated from soil and is known for its ability to produce a variety of bioactive compounds, including antibiotics and enzymes, which can be valuable in pharmaceutical and agricultural industries. The production of these secondary metabolites makes M. polyrhachis a subject of interest for researchers looking to discover new drugs and biocontrol agents. One of the most intriguing aspects of M. polyrhachis is its role in the soil ecosystem, where it contributes to nutrient cycling and the degradation of complex organic materials. This capability not only highlights its ecological importance but also positions it as a potential candidate for bioremediation efforts, particularly in environments contaminated with organic pollutants. The ability to thrive in diverse soil conditions further emphasizes its adaptability and resilience, making it a model organism for studying microbial ecology and evolution. Additionally, the genetic and metabolic pathways of M. polyrhachis are of significant interest, as they may provide insights into the mechanisms of antibiotic resistance and the synthesis of novel compounds. Understanding these pathways could lead to advancements in synthetic biology and the development of new therapeutic strategies. Overall, Micromonospora polyrhachis stands out as a valuable organism in both ecological research and applied sciences, with the potential to contribute significantly to our understanding of microbial interactions and the development of new biotechnological applications.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Micromonosporales

Family: Micromonosporaceae

Genus: Micromonospora

Species: Micromonospora polyrhachis

NCBI ID

1282883

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/203/835/GCA_014203835.1_ASM1420383v1

File for sequence-based predictions:
GCA_014203835.1_ASM1420383v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Micromonospora polyrhachis is a member of the actinobacteria group and has garnered attention for its potential clinical implications. This organism is primarily known for its role in the production of bioactive compounds, which have been studied for their antimicrobial properties. Notably, certain strains of Micromonospora polyrhachis have demonstrated activity against a range of pathogenic bacteria, making it a candidate for the development of new therapeutics in the face of rising antimicrobial resistance. In terms of human health, Micromonospora polyrhachis has been isolated from various environmental sources, including soil and decaying organic matter, suggesting its ecological significance. However, its direct association with human disease is not well-documented, and it is not typically recognized as a primary pathogen. Nonetheless, its ability to produce secondary metabolites may have implications in the treatment of infections caused by resistant strains of bacteria. The organism's immune evasion strategies are not extensively studied, but like many actinobacteria, it may possess mechanisms to survive in hostile environments, which could include the production of bioactive compounds that inhibit the immune response. Further research is needed to fully elucidate its role in human health and disease. In summary, while Micromonospora polyrhachis is not commonly associated with specific diseases, its potential for therapeutic applications and its role in the fight against antimicrobial resistance highlight its relevance in clinical microbiology and pharmacology.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Micromonospora polyrhachis is a species of actinobacteria commonly found in various terrestrial environments, particularly in soil and decaying organic matter. This microorganism thrives in nutrient-rich habitats, where it plays a crucial role in the decomposition process, contributing to nutrient cycling and soil health. Its presence is often associated with tropical and subtropical biomes, where the warm and humid conditions favor its growth and metabolic activities. In these environments, Micromonospora polyrhachis engages in symbiotic relationships with plants, aiding in the breakdown of complex organic materials and enhancing soil fertility. This interaction not only benefits the microorganism by providing a stable habitat but also supports plant growth by improving nutrient availability. Additionally, Micromonospora polyrhachis is known for its ability to produce various bioactive compounds, which can have significant ecological implications, including antimicrobial properties that help in suppressing pathogenic microorganisms in the soil. This characteristic makes it an important player in maintaining the balance of microbial communities within its habitat. Overall, the ecological niche of Micromonospora polyrhachis is characterized by its adaptability to varied soil types and its essential role in the decomposition of organic matter, making it a vital component of the ecosystems it inhabits.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Micromonospora polyrhachis has shown significant potential in various industrial applications. One of the most notable areas is in biotechnology, where it is utilized for its ability to produce a range of bioactive compounds, including antibiotics. This capability is particularly valuable in the development of new pharmaceuticals, as the metabolites produced during fermentation processes can lead to the discovery of novel therapeutic agents. In the realm of waste management, Micromonospora polyrhachis has been studied for its role in biodegradation of complex organic materials. Its enzymatic activity allows it to break down pollutants and organic waste, making it a candidate for bioremediation efforts in contaminated environments. Additionally, this microorganism has potential applications in biofuel production. Through fermentation, it can convert biomass into biofuels, contributing to sustainable energy solutions. The metabolic pathways of Micromonospora polyrhachis can be harnessed to optimize the yield of biofuels from agricultural waste, thus promoting a circular economy. Overall, Micromonospora polyrhachis demonstrates versatility across multiple industries, particularly in pharmaceutical development, waste management, and biofuel production, making it a valuable organism for future research and industrial applications.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	google/gemini-pro	google/gemma-7b-it	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	mistralai/mixtral-8x7b-instruct:nitro	openchat/openchat-7b	anthropic/claude-3-haiku:beta	google/gemini-flash-1.5	google/gemini-flash-1.5	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-4o	openai/gpt-4o	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	FALSE	false ✓	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Gram staining	gram stain positive	gram stain positive ✓	gram stain negative ✗	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain negative ✗
Aerophilicity	aerobic	aerobic ✓	N/A	aerobic ✓	aerotolerant ✗	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	false ✓	true ✗	true ✗	false ✓	true ✗	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗
Biofilm formation	N/A	true	true	false	true	false	true	true	false	true	true	true	true	true	true	true	false	false	true	true	true	true	false	false	true	true	true	true
Animal pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	false	true	true	true	false	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true	true	true	false	false
Host association	FALSE	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	TRUE	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗
Hemolysis	N/A	N/A	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	gamma	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	N/A	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	coccus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	spirillum	spirillum

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