Photobacterium sanctipauli

General Information

Photobacterium sanctipauli is a fascinating microorganism that belongs to the family Vibrionaceae. This species is particularly interesting due to its bioluminescent properties, which make it a subject of extensive research in marine biology and biotechnology. The light produced by P. sanctipauli is a result of a biochemical reaction involving the enzyme luciferase, which catalyzes the oxidation of a luciferin substrate. This bioluminescence is not only a captivating natural phenomenon but also has practical applications in scientific research, such as in the development of biosensors and as a reporter gene in molecular biology. Another unique aspect of Photobacterium sanctipauli is its ecological role in marine environments. It is often found in symbiotic relationships with marine organisms, such as fish and squid, where it contributes to the host's light production. This symbiosis is crucial for the host's survival, aiding in camouflage, predation, and communication. From a genetic perspective, P. sanctipauli has a well-characterized genome that provides insights into the molecular mechanisms underlying bioluminescence and symbiosis. The study of its genetic material has revealed a complex regulatory network that controls light production, making it a model organism for understanding gene regulation and expression in bioluminescent bacteria. In summary, Photobacterium sanctipauli is a microorganism of significant interest due to its bioluminescence, ecological interactions, and genetic characteristics. Its study not only enhances our understanding of marine microbial ecology but also offers potential applications in biotechnology and molecular biology.

Photobacterium sanctipauli is a fascinating marine bacterium that belongs to the family Vibrionaceae. This organism is particularly interesting due to its bioluminescent properties, which are a result of the presence of luciferase enzymes. The ability to produce light is not only a captivating feature but also serves ecological functions, such as attracting prey or facilitating communication among marine organisms. This bioluminescence is a key characteristic that sets P. sanctipauli apart from many other bacteria. Another notable aspect of Photobacterium sanctipauli is its habitat; it is typically found in deep-sea environments, where it plays a role in the marine ecosystem. The study of this organism can provide insights into the adaptations of life in extreme conditions, making it valuable for research in marine biology and ecology. Understanding the mechanisms behind its bioluminescence can also have implications for biotechnology, including applications in imaging and biosensors. Furthermore, P. sanctipauli has been explored for its potential in aquaculture, as its presence can indicate healthy marine environments and contribute to the overall health of fish populations. The organism's unique metabolic pathways and interactions with other marine species make it a subject of interest for researchers studying microbial ecology and symbiotic relationships in oceanic systems. Overall, Photobacterium sanctipauli exemplifies the intricate connections within marine ecosystems and highlights the importance of microbial life in sustaining ocean health.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Vibrionales

Family: Vibrionaceae

Genus: Photobacterium

Species: Photobacterium sanctipauli

NCBI ID

1342794

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/026/495/GCF_003026495.1_ASM302649v1

File for sequence-based predictions:
GCF_003026495.1_ASM302649v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Photobacterium sanctipauli is a marine bacterium that has garnered attention for its potential clinical implications, particularly in the context of infections and its role in human health. While primarily known for its presence in marine environments, it has been isolated from various sources, including fish and seafood, raising concerns about its potential as a foodborne pathogen. Infections associated with Photobacterium sanctipauli are relatively rare but can occur, particularly in immunocompromised individuals or those with underlying health conditions. Clinical manifestations may include wound infections or gastroenteritis following the consumption of contaminated seafood. One of the notable aspects of Photobacterium sanctipauli is its ability to produce bioluminescence, which has been studied for potential applications in biotechnology and medical diagnostics. However, its pathogenicity is not well characterized compared to other more prominent marine pathogens. In terms of antimicrobial resistance, there is limited data available, but like many marine bacteria, it may possess resistance mechanisms that could complicate treatment options. Understanding the immune response to Photobacterium sanctipauli is crucial, especially in the context of its interactions with the human body and potential evasion strategies. Overall, while Photobacterium sanctipauli is not a leading cause of human disease, its presence in seafood and potential for infections warrant further investigation into its clinical relevance and safety in food products.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Photobacterium sanctipauli is a marine bacterium commonly found in coastal waters and deep-sea environments. This microorganism thrives in saline conditions, often associated with marine sediments and planktonic communities. Its presence is particularly noted in areas with high organic matter, where it plays a crucial role in the degradation of organic compounds, contributing to nutrient cycling within the ecosystem. In terms of ecological interactions, Photobacterium sanctipauli is known for its bioluminescent properties, which can attract various marine organisms, thus facilitating symbiotic relationships. This bioluminescence is not only a means of communication but also serves to deter predators and attract prey, showcasing its adaptive strategies in the marine biome. Furthermore, this bacterium can engage in mutualistic relationships with certain fish species, providing them with light in exchange for nutrients, which highlights its importance in the food web of marine ecosystems. Overall, Photobacterium sanctipauli exemplifies the intricate connections within marine biomes, demonstrating its role in both ecological balance and the health of marine environments.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Photobacterium sanctipauli has shown potential in various industrial applications, particularly in the fields of biotechnology and waste management. This organism is known for its ability to produce bioluminescence, which can be harnessed in bioluminescent assays for environmental monitoring and detection of pollutants. Its luminescent properties can serve as a biological indicator of water quality, making it valuable in environmental biotechnology. In the realm of waste management, Photobacterium sanctipauli has been studied for its role in biodegradation processes. It can contribute to the breakdown of organic pollutants in marine environments, thus aiding in the remediation of contaminated water bodies. This capability is particularly important in the context of oil spills and other hydrocarbon-related pollution, where the organism can help in the natural attenuation of harmful substances. Furthermore, the enzymatic activities of Photobacterium sanctipauli can be explored for biofuel production. The organism's metabolic pathways may be utilized in fermentation processes to convert organic substrates into biofuels, such as ethanol or biodiesel, although this application is still under investigation. In pharmaceutical development, the unique biochemical properties of Photobacterium sanctipauli could lead to the discovery of novel compounds with antimicrobial or antifungal activities, which are essential in the development of new drugs. The organism's ability to produce various metabolites may also be explored for their therapeutic potential. Overall, Photobacterium sanctipauli presents a promising avenue for research and application across multiple industries, particularly in enhancing sustainability and efficiency in biotechnology, waste management, and pharmaceutical sectors.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	mistralai/mixtral-8x7b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	openai/gpt-4	openai/gpt-4	anthropic/claude-3.5-sonnet	google/gemma-7b-it	mistralai/mistral-7b-instruct	meta-llama/llama-3-70b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	google/gemini-pro	google/gemini-pro	google/gemini-flash-1.5	google/gemini-flash-1.5	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	anthropic/claude-3-haiku:beta	anthropic/claude-3-haiku:beta	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	facultatively anaerobic ✗	aerotolerant ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	false	true	true	false	true	true	true	true	true	false	true	true	false	false	false	false	false	false	true	true	true	true	true	true	true	true
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true
Host association	N/A	true	true	true	true	false	false	true	true	true	true	false	true	true	false	false	false	false	false	false	true	true	true	true	true	true	true	true
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	beta	beta	N/A	N/A	N/A	N/A	N/A	N/A	N/A	gamma	gamma	gamma	gamma	N/A	N/A	N/A	N/A	N/A	N/A	beta	beta	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	spirillum ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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