Paraburkholderia caledonica

General Information

Paraburkholderia caledonica is a fascinating microorganism that belongs to the genus Paraburkholderia. This genus is known for its diverse metabolic capabilities and environmental versatility. One of the most intriguing aspects of P. caledonica is its ability to thrive in a variety of ecological niches, including soil and plant-associated environments. This adaptability makes it a valuable subject for studies on microbial ecology and environmental microbiology. A key characteristic of P. caledonica is its potential for bioremediation. The species has been observed to degrade various environmental pollutants, including aromatic compounds, which are often challenging to break down. This capability is particularly important for cleaning up contaminated environments, making P. caledonica a promising candidate for environmental biotechnology applications. Another interesting feature of P. caledonica is its symbiotic relationship with plants. It can promote plant growth by facilitating nutrient uptake and producing phytohormones. This plant-microbe interaction is a significant area of research, especially in the context of sustainable agriculture and the development of biofertilizers. From a genetic perspective, P. caledonica possesses a versatile genome that encodes a wide array of enzymes and metabolic pathways. This genetic diversity allows the organism to adapt to different environmental conditions and utilize various substrates for growth. Researchers are particularly interested in exploring these genetic traits to understand the mechanisms underlying its metabolic flexibility and environmental resilience. In summary, Paraburkholderia caledonica is a microorganism of considerable interest due to its bioremediation potential, plant growth-promoting properties, and genetic versatility. These characteristics make it a valuable model for studying microbial ecology, environmental biotechnology, and sustainable agriculture.

Paraburkholderia caledonica is a fascinating bacterium that has garnered attention due to its unique ecological niche and potential applications in biotechnology. Originally isolated from a contaminated site in New Caledonia, this organism is part of the diverse genus Paraburkholderia, which is known for its ability to thrive in various environments, including those contaminated with hydrocarbons and heavy metals. This adaptability makes P. caledonica a candidate for bioremediation efforts, where it could be utilized to clean up polluted environments by degrading toxic compounds. One of the most interesting aspects of P. caledonica is its metabolic versatility. It possesses the ability to utilize a wide range of organic compounds as carbon sources, which is a trait that can be harnessed in industrial applications, particularly in the production of biofuels and other valuable biochemicals. The organism's capacity to degrade complex organic materials highlights its potential role in sustainable practices. Additionally, P. caledonica has been studied for its interactions with plant roots, suggesting a possible role in promoting plant growth and health. This characteristic could be particularly valuable in agriculture, where it may enhance soil quality and plant resilience against environmental stressors. The potential for symbiotic relationships with plants opens new avenues for research in sustainable agriculture and ecosystem management. Overall, Paraburkholderia caledonica stands out not only for its ecological significance but also for its promising applications in environmental biotechnology and agriculture, making it a valuable subject for ongoing research.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Betaproteobacteria

Order: Burkholderiales

Family: Burkholderiaceae

Genus: Paraburkholderia

Species: Paraburkholderia caledonica

NCBI ID

134536

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/330/745/GCF_003330745.1_ASM333074v1

File for sequence-based predictions:
GCF_003330745.1_ASM333074v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Paraburkholderia caledonica is a member of the Burkholderia genus, which is known for its diverse ecological roles and clinical significance. This bacterium has been associated with various infections, particularly in immunocompromised individuals. It is recognized for its potential to cause opportunistic infections, especially in patients with underlying health conditions such as cystic fibrosis or those undergoing immunosuppressive therapy. The pathogenicity of Paraburkholderia caledonica is attributed to its ability to evade the immune response, utilizing mechanisms such as biofilm formation and the secretion of virulence factors that disrupt host defenses. In terms of antimicrobial resistance, strains of Paraburkholderia caledonica have shown resistance to multiple classes of antibiotics, complicating treatment options for infections. This resistance is often linked to the presence of specific resistance genes and efflux pumps that expel antimicrobial agents from the bacterial cell, making it a significant concern in clinical settings. Moreover, the organism has been studied for its potential applications in bioremediation and as a probiotic in certain contexts, although its clinical use is not yet well-established. Understanding the ecological and pathogenic roles of Paraburkholderia caledonica is crucial for developing effective therapeutic strategies and managing infections associated with this organism.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Paraburkholderia caledonica is a versatile bacterium commonly found in various habitat types across different biomes. This microorganism is particularly associated with soil ecosystems, where it plays a crucial role in nutrient cycling and organic matter decomposition. Its presence in these environments contributes to the overall health and fertility of the soil, making it an essential player in maintaining soil biodiversity. In addition to soil, Paraburkholderia caledonica has been documented in aquatic environments, including freshwater systems. Here, it can thrive in nutrient-rich conditions, often found in association with organic materials. This bacterium is known for its ability to degrade complex organic compounds, thus facilitating the breakdown of pollutants and contributing to bioremediation efforts in contaminated water bodies. Furthermore, Paraburkholderia caledonica exhibits notable interactions with plant roots, indicating a potential role in plant-microbe symbiosis. This relationship can enhance nutrient uptake for plants, particularly in nutrient-poor soils, thereby promoting plant growth and health. Such interactions underscore the importance of this microorganism in terrestrial ecosystems, where it supports plant communities and contributes to overall ecosystem stability. Overall, Paraburkholderia caledonica thrives in diverse environments, showcasing its adaptability and significance in various ecological niches, from soil ecosystems to freshwater habitats, and its role in symbiotic relationships with plants.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Paraburkholderia caledonica has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where Paraburkholderia caledonica is utilized for its ability to perform biodegradation of environmental pollutants, particularly in contaminated soils and water. This capability makes it a valuable asset in waste management, as it can help in the remediation of hazardous waste sites by breaking down toxic compounds into less harmful substances. In the realm of biofuel production, Paraburkholderia caledonica has been studied for its role in the fermentation of organic materials, which can lead to the generation of bioethanol and other biofuels. The organism's metabolic pathways are of particular interest for optimizing the fermentation process, enhancing yield and efficiency in biofuel production. Additionally, Paraburkholderia caledonica has potential applications in pharmaceutical development. Its unique enzymatic activities can be harnessed for the production of bioactive compounds, which may serve as precursors for drug synthesis or as therapeutic agents themselves. The organism's ability to produce specific enzymes can be exploited in enzyme production, facilitating various biochemical reactions in pharmaceutical manufacturing. Overall, Paraburkholderia caledonica represents a promising candidate for advancing technologies in biotechnology, waste management, biofuel production, and pharmaceutical development, showcasing its versatility and importance in industrial microbiology.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	mistralai/mixtral-8x7b-instruct:nitro	anthropic/claude-3.5-sonnet	meta-llama/llama-3-70b-instruct:nitro	google/gemini-flash-1.5	google/palm-2-chat-bison-32k	meta-llama/llama-3-8b-instruct:nitro	openchat/openchat-7b	anthropic/claude-3-haiku:beta	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/gemini-pro-1.5	google/gemini-pro-1.5	google/gemini-pro	google/gemini-pro	google/gemma-7b-it	google/gemma-7b-it	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	openai/gpt-4	openai/gpt-4	openai/gpt-4o	openai/gpt-4o	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	facultatively anaerobic ✗	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	false ✓	true ✗	true ✗	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	false	false	false	false	false	false	false	false	false	false	false	true	true	true	true	false	false	false	false	false	false	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	false	false
Host association	N/A	true	false	false	false	false	false	false	false	false	false	false	false	true	true	false	false	true	true	false	false	true	true	false	false	false	false	false	false
Plant pathogenicity	FALSE	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	spirillum ✗	spirillum ✗

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