Bacillus mycoides

General Information

Bacillus mycoides is a fascinating microorganism known for its distinctive colony morphology and its potential applications in various fields. One of the most notable characteristics of B. mycoides is its unique growth pattern. When cultured on agar plates, it forms spreading, filamentous colonies that resemble fungal mycelium, which is quite unusual for bacteria. This characteristic makes it easily distinguishable from other Bacillus species. B. mycoides is also of interest due to its biocontrol properties. It has been studied for its ability to suppress plant pathogens, making it a potential candidate for use in sustainable agriculture. The bacterium produces a range of secondary metabolites that can inhibit the growth of harmful fungi and bacteria, thereby protecting crops from diseases. Another intriguing aspect of B. mycoides is its resilience to environmental stress. It can survive in a variety of harsh conditions, including extreme temperatures and pH levels. This resilience makes it a valuable model organism for studying stress responses and adaptation mechanisms in bacteria. In addition to its agricultural applications, B. mycoides has been explored for its role in bioremediation. It has the ability to degrade various pollutants, including hydrocarbons and heavy metals, which makes it a promising candidate for cleaning up contaminated environments. Overall, Bacillus mycoides stands out due to its unique colony morphology, biocontrol potential, environmental resilience, and bioremediation capabilities. These characteristics make it a valuable organism for both basic research and practical applications in agriculture and environmental science.

Bacillus mycoides is a fascinating bacterium known for its unique filamentous growth pattern, which resembles that of fungi. This characteristic makes it particularly interesting in the study of microbial morphology and ecology. The organism is often found in soil and is capable of producing a variety of enzymes, which can be valuable in biotechnological applications, such as bioremediation and the degradation of complex organic compounds. One of the most notable features of Bacillus mycoides is its ability to produce a range of secondary metabolites, including antimicrobial compounds. This property has garnered attention for its potential use in developing new antibiotics or natural preservatives, making it a valuable organism in pharmaceutical research. Additionally, Bacillus mycoides has been studied for its role in soil health and plant growth promotion. It can enhance nutrient availability and improve soil structure, which is crucial for sustainable agriculture. The bacterium's interactions with plant roots and its ability to form beneficial associations highlight its importance in the rhizosphere. Overall, the unique morphological characteristics, enzyme production capabilities, and ecological significance of Bacillus mycoides make it a subject of interest for researchers in microbiology, agriculture, and biotechnology.

Taxonomy

Superkingdom: Bacteria

Phylum: Bacillota

Class: Bacilli

Order: Bacillales

Family: Bacillaceae

Genus: Bacillus

Species: Bacillus mycoides

NCBI ID

1405

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/018/739/485/GCA_018739485.1_ASM1873948v1

File for sequence-based predictions:
GCA_018739485.1_ASM1873948v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The bacterium Bacillus mycoides is a member of the Bacillus genus, known for its ability to form endospores and its environmental resilience. While it is primarily considered a saprophytic organism, it has been associated with various clinical implications. Infections caused by Bacillus mycoides are rare but can occur, particularly in immunocompromised individuals. The organism has been implicated in cases of wound infections and bacteremia, especially in patients with underlying health conditions or those undergoing invasive procedures. One of the notable features of Bacillus mycoides is its potential for antimicrobial resistance. It has shown resistance to several common antibiotics, which complicates treatment options for infections. This resistance is often attributed to the presence of plasmids that carry resistance genes, making it a concern in clinical settings. In terms of immune evasion, Bacillus mycoides can produce biofilms, which protect it from the host's immune response and enhance its survival in hostile environments. This characteristic is particularly relevant in chronic infections, where biofilm formation can lead to persistent and difficult-to-treat infections. Despite its pathogenic potential, Bacillus mycoides has also been studied for its beneficial applications. It has been explored as a potential probiotic due to its ability to produce antimicrobial compounds that may inhibit pathogenic bacteria. Additionally, its role in bioremediation and as a biocontrol agent in agriculture highlights its versatility beyond human health implications. Overall, while Bacillus mycoides is not a common pathogen, its clinical relevance cannot be overlooked, particularly in specific populations and settings where its pathogenicity and resistance mechanisms may pose significant challenges.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Bacillus mycoides is a versatile bacterium commonly found in a variety of soil environments and plant-associated habitats. This microorganism thrives in nutrient-rich soils, where it plays a crucial role in the decomposition of organic matter, contributing to soil fertility and health. Its ability to form endospores allows it to withstand extreme conditions, including drought and nutrient scarcity, making it well-adapted to fluctuating environmental conditions. In agricultural ecosystems, B. mycoides is often associated with the rhizosphere of plants, where it engages in beneficial interactions with plant roots. This bacterium can enhance nutrient uptake, particularly phosphorus, and may also produce plant growth-promoting substances, thus supporting plant health and growth. Its presence in the rhizosphere can lead to improved soil structure and increased microbial diversity, which are essential for sustainable agricultural practices. Additionally, B. mycoides has been documented in composting environments, where it aids in the breakdown of organic materials, further contributing to nutrient cycling. Its role in bioremediation is also noteworthy, as it can degrade various pollutants, thus helping to restore contaminated environments. Overall, Bacillus mycoides exemplifies the intricate relationships within terrestrial biomes, showcasing its importance in nutrient cycling, plant health, and environmental resilience.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The bacterium Bacillus mycoides has shown significant potential in various industrial applications due to its unique metabolic capabilities and resilience. One of the primary areas of interest is in biotechnology, where Bacillus mycoides is utilized in fermentation processes to produce a range of valuable metabolites, including enzymes and organic acids. These enzymes, particularly proteases and amylases, are essential in food processing, textile, and detergent industries, enhancing the efficiency of various manufacturing processes. In the realm of waste management, Bacillus mycoides has been studied for its ability to degrade complex organic materials, making it a candidate for biodegradation of pollutants in contaminated environments. Its capacity to break down hydrocarbons and other toxic compounds can be harnessed in bioremediation efforts, helping to restore polluted sites. Furthermore, this microorganism is also being explored for its role in biofuel production. Through fermentation, Bacillus mycoides can convert biomass into bioethanol, providing a sustainable alternative to fossil fuels. The efficiency of its metabolic pathways in converting sugars into alcohol makes it a valuable organism in the renewable energy sector. In pharmaceutical development, Bacillus mycoides is recognized for its potential in producing antimicrobial compounds. Its ability to synthesize various bioactive molecules can lead to the development of new antibiotics and other therapeutic agents, addressing the growing concern of antibiotic resistance. Overall, the diverse applications of Bacillus mycoides in biotechnology, waste management, biofuel production, and pharmaceutical development highlight its importance as a versatile microorganism in industrial processes.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	mistralai/mistral-7b-instruct	google/gemini-flash-1.5	anthropic/claude-3-haiku:beta	google/gemini-pro	google/gemma-7b-it	meta-llama/llama-3-70b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/gemini-pro-1.5	google/gemini-pro-1.5	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-4o	openai/gpt-4o	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	FALSE	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain negative ✗	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓
Aerophilicity	aerobic	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	TRUE	false ✗	false ✗	true ✓	true ✓	true ✓	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗
Biosafety level	biosafety level 2	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗
Health association	N/A	false	false	true	true	true	true	true	false	false	false	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	false	false
Host association	FALSE	true ✗	false ✓	true ✗	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Spore formation	TRUE	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Hemolysis	N/A	N/A	gamma	beta	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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