Chryseobacterium geocarposphaerae

General Information

Chryseobacterium geocarposphaerae is a fascinating microorganism that belongs to the genus Chryseobacterium. This genus is known for its diverse metabolic capabilities and environmental versatility. One of the most intriguing aspects of C. geocarposphaerae is its ability to thrive in soil environments, particularly those associated with plant roots. This makes it a subject of interest in agricultural and environmental microbiology. Chryseobacterium geocarposphaerae has been isolated from the rhizosphere, the region of soil that is directly influenced by root secretions and associated soil microorganisms. This association suggests that C. geocarposphaerae may play a role in plant health and growth promotion. The potential for C. geocarposphaerae to produce bioactive compounds that could protect plants from pathogens or enhance nutrient uptake is a key area of research. Another unique characteristic of C. geocarposphaerae is its production of pigments. These pigments not only give the colonies a distinctive color but may also have antioxidant properties, which could be beneficial in various biotechnological applications. From a biochemical perspective, C. geocarposphaerae exhibits a range of enzymatic activities, including the ability to degrade complex organic compounds. This makes it a candidate for bioremediation efforts, where it could be used to break down pollutants in contaminated soils. In summary, Chryseobacterium geocarposphaerae is a microorganism of significant interest due to its environmental adaptability, potential agricultural benefits, and biotechnological applications. Its role in the rhizosphere, pigment production, and enzymatic capabilities make it a valuable subject for further research.

Chryseobacterium geocarposphaerae is a fascinating bacterium belonging to the genus Chryseobacterium, which is known for its diverse ecological roles and unique biochemical capabilities. This species was first isolated from soil, highlighting its environmental significance and adaptability to various habitats. One of the most interesting aspects of C. geocarposphaerae is its ability to degrade complex organic compounds, making it a potential candidate for bioremediation applications. This characteristic is particularly valuable in the context of environmental cleanup, as it can help in the breakdown of pollutants and contribute to soil health. The organism is also notable for its production of various enzymes, which can be harnessed in industrial processes. These enzymes may include proteases, lipases, and cellulases, which are essential for the degradation of proteins, fats, and cellulose, respectively. This enzymatic versatility opens up avenues for research into sustainable practices in waste management and bioenergy production. Furthermore, C. geocarposphaerae has been studied for its potential in agriculture, particularly in promoting plant growth and health. Its interactions with plant roots may enhance nutrient availability and stimulate beneficial microbial communities, which can lead to improved crop yields. This aspect makes it a subject of interest for researchers looking to develop eco-friendly agricultural practices. In summary, Chryseobacterium geocarposphaerae stands out due to its environmental adaptability, enzymatic capabilities, and potential applications in bioremediation and agriculture, making it a valuable organism for ongoing research and practical applications.

Taxonomy

Superkingdom: Bacteria

Phylum: Bacteroidota

Class: Flavobacteriia

Order: Flavobacteriales

Family: Weeksellaceae

Genus: Chryseobacterium

Species: Chryseobacterium geocarposphaerae

NCBI ID

1416776

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/797/535/GCF_002797535.1_ASM279753v1

File for sequence-based predictions:
GCF_002797535.1_ASM279753v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The bacterium Chryseobacterium geocarposphaerae is a member of the genus Chryseobacterium, which is known for its environmental presence and potential clinical significance. While specific studies on C. geocarposphaerae are limited, its relatives within the Chryseobacterium genus have been associated with various clinical implications. Notably, Chryseobacterium species are often implicated in nosocomial infections, particularly in immunocompromised patients, leading to bacteremia, pneumonia, and wound infections. This organism exhibits antimicrobial resistance, particularly to commonly used antibiotics, which poses a challenge in clinical settings. Resistance mechanisms may include the production of beta-lactamases and other enzymes that degrade antibiotics, making infections difficult to treat. The presence of such resistant strains in healthcare environments raises concerns about their role in hospital outbreaks. In terms of immune evasion, Chryseobacterium species can produce biofilms, which protect them from both the host immune response and antibiotic treatment. This ability to form biofilms is a significant factor in their pathogenicity, particularly in indwelling medical devices. While C. geocarposphaerae itself may not have been directly linked to specific outbreaks, its relatives have been documented in various clinical cases, highlighting the need for ongoing surveillance and research into its pathogenic potential. Understanding the clinical relevance of C. geocarposphaerae and its relatives is crucial for developing effective treatment strategies and infection control measures in healthcare settings.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Chryseobacterium geocarposphaerae is a bacterium commonly associated with soil environments, particularly in agricultural and natural ecosystems. This microorganism thrives in nutrient-rich soils, where it plays a crucial role in the decomposition of organic matter, contributing to nutrient cycling and soil health. Its presence is often linked to the breakdown of plant materials, which enhances soil fertility and promotes plant growth. In addition to its role in nutrient cycling, Chryseobacterium geocarposphaerae exhibits notable interactions with other soil microorganisms. It can engage in symbiotic relationships with various fungi and plants, aiding in the uptake of nutrients such as nitrogen and phosphorus. This symbiosis is particularly important in agricultural biomes, where it can help improve crop yields and resilience against environmental stressors. Furthermore, this bacterium is adapted to thrive in varied soil conditions, including those that are slightly acidic to neutral pH levels. Its ability to survive in diverse habitats makes it a key player in maintaining the ecological balance within terrestrial ecosystems. Overall, Chryseobacterium geocarposphaerae is an essential component of the soil microbiome, contributing to the health and sustainability of its environment.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Chryseobacterium geocarposphaerae has shown potential in various industrial applications due to its unique metabolic capabilities. One of the notable areas is in biotechnology, where it can be utilized in fermentation processes to produce valuable metabolites. This organism is known for its ability to degrade complex organic compounds, making it a candidate for waste management solutions, particularly in the treatment of agricultural and food waste. In the realm of biofuel production, Chryseobacterium geocarposphaerae may play a role in the conversion of biomass into biofuels through biodegradation and fermentation pathways, potentially enhancing the efficiency of biofuel generation from organic materials. Additionally, this microorganism has been studied for its pharmaceutical development applications, particularly in the production of bioactive compounds that could lead to new drug discoveries. Its enzymatic activity can be harnessed for the synthesis of pharmaceuticals, showcasing its versatility in the biotechnology sector. Overall, Chryseobacterium geocarposphaerae represents a promising candidate for various industrial processes, particularly in the fields of biotechnology, waste management, and pharmaceutical development.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	mistralai/mixtral-8x7b-instruct:nitro	google/gemini-pro	google/gemma-7b-it	mistralai/mistral-7b-instruct	google/palm-2-chat-bison-32k	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	anthropic/claude-3-haiku:beta	google/gemini-flash-1.5	google/gemini-flash-1.5	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/gemini-pro-1.5	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	openai/gpt-4o	openai/gpt-4o	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	FALSE	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗
Biofilm formation	N/A	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	false	false	false	false	false	false	false	false	false	false	false	false	false	true	true	false	false	false	false	false	false	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	true	false	false	false	false	true	false	true	false	false	false	false	false	false	true	true	true	true	true	true	false	false	true	true	false	false	false	false
Host association	N/A	true	false	false	false	false	true	false	false	false	false	false	false	false	false	true	true	false	false	false	false	false	false	true	true	false	false	true	true
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	gamma	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗

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