Mycolicibacterium boenickei

General Information

Source: gpt-4o-2024-05-13

Mycolicibacterium boenickei is a fascinating microorganism belonging to the genus Mycolicibacterium. This genus is known for its complex and unique cell wall structure, which includes mycolic acids, contributing to its resilience and distinctive characteristics. One of the most intriguing aspects of M. boenickei is its potential in bioremediation. This organism has shown promise in breaking down environmental pollutants, making it a valuable candidate for cleaning up contaminated sites. Additionally, M. boenickei is of interest in the field of biotechnology due to its ability to produce bioactive compounds. These compounds can have various applications, including antimicrobial properties, which are crucial in the development of new antibiotics. The study of M. boenickei also provides insights into the broader metabolic pathways and survival strategies of mycobacteria, which can be applied to understanding pathogenic relatives within the same genus. From a research perspective, M. boenickei offers a unique model for studying the interactions between mycobacteria and their environments. Its ability to adapt to different ecological niches and its role in nutrient cycling are areas of ongoing investigation. The genetic and metabolic versatility of M. boenickei makes it a subject of significant interest for microbiologists and environmental scientists alike.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Mycobacteriales

Family: Mycobacteriaceae

Genus: Mycolicibacterium

Species: Mycolicibacterium boenickei

NCBI ID

146017

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/010/731/295/GCA_010731295.1_ASM1073129v1

File for sequence-based predictions:
GCA_010731295.1_ASM1073129v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Mycolicibacterium boenickei is a member of the genus Mycolicibacterium, which is known for its association with various clinical implications. This microorganism has been implicated in infections primarily in immunocompromised individuals, leading to pulmonary disease and cutaneous infections. Its pathogenicity is attributed to its ability to evade the immune response, often through mechanisms such as the production of mycolic acids that enhance its survival within macrophages. In terms of antimicrobial resistance, M. boenickei has shown resistance to multiple antibiotics, complicating treatment options for infections. This resistance is particularly concerning in the context of increasing rates of multidrug-resistant infections globally. Furthermore, M. boenickei has been associated with outbreaks in certain healthcare settings, highlighting its relevance in nosocomial infections. The organism's role in human health is still being explored, but it is recognized for its potential as a pathogen in specific populations. While there are no widely recognized medical applications such as probiotics or vaccines specifically targeting M. boenickei, understanding its pathogenic mechanisms and resistance patterns is crucial for developing effective therapeutic strategies. Continued research is necessary to fully elucidate its clinical significance and to inform public health measures.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Mycolicibacterium boenickei is a species of actinobacteria that is primarily associated with soil environments and marine ecosystems. This microorganism thrives in nutrient-rich substrates, often found in decaying organic matter, where it plays a crucial role in the decomposition process. Its ability to degrade complex organic compounds makes it an important player in nutrient cycling within these biomes. In soil habitats, Mycolicibacterium boenickei contributes to the breakdown of organic materials, facilitating the release of nutrients back into the ecosystem. This process not only supports plant growth but also enhances soil health and fertility. The organism's presence is often linked to areas with high microbial diversity, indicating its role in maintaining ecological balance. In marine environments, Mycolicibacterium boenickei has been identified in sediments and biofilms, where it interacts with other microorganisms. Its ability to adapt to varying salinity levels and nutrient availability allows it to thrive in these dynamic habitats. The organism may engage in symbiotic relationships with other marine microbes, contributing to the overall health of the microbial community and influencing biogeochemical cycles in the ocean. Overall, Mycolicibacterium boenickei exemplifies the intricate connections within its biomes, showcasing its importance in both terrestrial and aquatic ecosystems through its roles in decomposition, nutrient cycling, and microbial interactions.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Mycolicibacterium boenickei has shown potential in various industrial applications, particularly in the fields of biotechnology, waste management, and pharmaceutical development. This organism is known for its ability to degrade complex organic compounds, making it a candidate for biodegradation processes in waste treatment facilities. Its enzymatic activity can break down pollutants, thus contributing to the remediation of contaminated environments. In the realm of biofuel production, Mycolicibacterium boenickei can be utilized in fermentation processes to convert biomass into biofuels. The organism's metabolic pathways allow it to efficiently process lignocellulosic materials, which are abundant and renewable resources for biofuel generation. Furthermore, in pharmaceutical development, the unique metabolic products of Mycolicibacterium boenickei have been investigated for their potential therapeutic properties. The organism's ability to produce specific secondary metabolites may lead to the discovery of new drugs or bioactive compounds that can be harnessed in the pharmaceutical industry. Overall, Mycolicibacterium boenickei represents a versatile microorganism with significant promise in enhancing sustainability and efficiency across multiple industrial sectors.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	google/gemini-pro	meta-llama/llama-3-70b-instruct:nitro	google/gemini-flash-1.5	mistralai/mixtral-8x7b-instruct:nitro	anthropic/claude-3.5-sonnet	google/gemma-7b-it	perplexity/llama-3-sonar-small-32k-chat	microsoft/phi-3-mini-128k-instruct	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	anthropic/claude-3-haiku:beta	anthropic/claude-3-haiku:beta	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	openchat/openchat-7b	openchat/openchat-7b
Motility	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain negative ✗	gram stain positive ✓	gram stain negative ✗	gram stain positive ✓	gram stain negative ✗	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain variable ✗	N/A	gram stain negative ✗	N/A	gram stain positive ✓
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	aerobic ✓	facultatively anaerobic ✗	aerobic ✓	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	N/A	false	false	false	false	true	true	false	false	false	false	false	false	false	false	false	false	true	true	true	true	true	true	true	true	true	true	false	false
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true	false	false	true	true	true	true	true	true	false	false
Animal pathogenicity	TRUE	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗
Biosafety level	biosafety level 2	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓
Health association	N/A	true	true	true	true	false	true	true	false	false	false	true	true	false	false	true	true	true	true	true	true	true	true	false	false	true	true	false	false
Host association	TRUE	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	alpha	alpha	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗

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