Streptomyces europaeiscabiei

General Information

Streptomyces europaeiscabiei is a fascinating microorganism primarily known for its role in plant pathology, particularly in causing common scab in potatoes. This species belongs to the genus Streptomyces, which is renowned for its prolific production of antibiotics and other secondary metabolites. One of the most intriguing aspects of S. europaeiscabiei is its ability to produce thaxtomin A, a phytotoxin that is crucial for its pathogenicity. Thaxtomin A disrupts plant cell wall synthesis, leading to the characteristic scab lesions on tubers. In addition to its agricultural impact, S. europaeiscabiei is of significant interest in the field of microbial ecology and soil health. The genus Streptomyces is known for its complex life cycle and ability to degrade a wide range of organic materials, contributing to nutrient cycling in soil ecosystems. The study of S. europaeiscabiei can provide insights into the mechanisms of plant-microbe interactions and the evolution of pathogenicity within the Streptomyces genus. Moreover, the genetic and biochemical pathways involved in thaxtomin A production are of particular interest for biotechnological applications. Understanding these pathways could lead to the development of novel strategies for disease control in agriculture, as well as the discovery of new bioactive compounds with potential pharmaceutical applications. Overall, Streptomyces europaeiscabiei is a microorganism that not only poses challenges for crop production but also offers valuable opportunities for scientific research and biotechnological innovation.

Streptomyces europaeiscabiei is a fascinating actinobacterium known for its remarkable ability to produce a diverse array of bioactive compounds, including antibiotics and antifungal agents. This species is particularly interesting due to its role in soil ecology, where it contributes to the degradation of organic matter and the cycling of nutrients. Its capacity to synthesize secondary metabolites makes it a valuable organism in pharmaceutical research, as many of these compounds have potential therapeutic applications. One of the unique aspects of S. europaeiscabiei is its ability to thrive in various environmental conditions, which may lead to the discovery of novel compounds that could be harnessed for agricultural or medical purposes. The genetic and metabolic pathways of this organism are of significant interest, as they can provide insights into the mechanisms of natural product biosynthesis. Furthermore, the study of S. europaeiscabiei can enhance our understanding of microbial interactions in soil ecosystems, particularly how it interacts with plants and other microorganisms. Overall, Streptomyces europaeiscabiei stands out as a promising candidate for biotechnological applications, particularly in the fields of drug discovery and sustainable agriculture, making it a subject of ongoing research and exploration.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Kitasatosporales

Family: Streptomycetaceae

Genus: Streptomyces

Species: Streptomyces europaeiscabiei

NCBI ID

146819

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/036/346/855/GCF_036346855.1_ASM3634685v1

File for sequence-based predictions:
GCF_036346855.1_ASM3634685v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Streptomyces europaeiscabiei is a member of the genus Streptomyces, which is known for its significant role in the production of antibiotics and other bioactive compounds. While S. europaeiscabiei itself is not commonly associated with human infections, its relatives have been implicated in various infections and are of interest in the field of medical microbiology. Clinical implications of this organism primarily revolve around its potential use in therapeutics and its role in the natural microbiome. Pathogenicity is not a well-documented feature of S. europaeiscabiei, but the genus Streptomyces is known for its ability to produce a wide range of secondary metabolites, including antibiotics such as streptomycin and tetracycline. This highlights the potential of S. europaeiscabiei in the development of new antimicrobial agents. In terms of antimicrobial resistance, while specific data on S. europaeiscabiei is limited, the genus has been studied for its ability to produce compounds that can inhibit the growth of resistant bacterial strains. This makes it a candidate for further research in the context of combating antibiotic resistance. Moreover, the organism's interaction with the human body is primarily of interest in the context of its metabolites rather than direct pathogenicity. Its role in the soil microbiome and its potential applications in probiotics and biotechnology are areas of ongoing research. Overall, while Streptomyces europaeiscabiei may not have direct clinical relevance as a pathogen, its contributions to antibiotic production and potential therapeutic applications underscore its importance in the field of microbiology and medicine.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Streptomyces europaeiscabiei is a soil-dwelling bacterium that thrives in a variety of terrestrial ecosystems. This microorganism is predominantly found in nutrient-rich soils, where it plays a crucial role in the decomposition of organic matter. Its ability to produce a wide array of bioactive compounds makes it a significant player in the soil microbiome, contributing to nutrient cycling and soil health. In its natural habitat, Streptomyces europaeiscabiei engages in antibiotic production, which helps it compete with other microorganisms for resources. This competitive advantage allows it to establish itself in microbial communities and contributes to the overall biodiversity of the soil environment. Furthermore, its interactions with plants can lead to symbiotic relationships, where it may promote plant growth by enhancing nutrient availability or providing protection against pathogens. The organism is particularly well-adapted to alkaline soils, which are often found in arid and semi-arid regions. Here, it can withstand fluctuations in moisture and nutrient levels, showcasing its resilience and adaptability. Overall, Streptomyces europaeiscabiei is an essential component of the soil ecosystem, influencing both the microbial landscape and the health of plant communities.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Streptomyces europaeiscabiei is recognized for its significant contributions to various industrial applications. One of the primary areas is in biotechnology, where it is utilized for its ability to produce a wide range of bioactive compounds, including antibiotics and enzymes. This organism is particularly noted for its role in fermentation, which is a critical process in the production of pharmaceuticals and other bioactive substances. In the realm of waste management, Streptomyces europaeiscabiei has demonstrated potential in biodegradation processes, where it can break down complex organic materials, thus aiding in the treatment of waste and reducing environmental pollution. Its enzymatic activity is particularly valuable in the degradation of pollutants, making it a candidate for bioremediation efforts. Furthermore, this microorganism has been explored for its potential in biofuel production. Through fermentation processes, it can convert biomass into biofuels, contributing to sustainable energy solutions. The ability of Streptomyces europaeiscabiei to produce enzymes that facilitate the breakdown of lignocellulosic materials enhances its utility in this sector. Overall, Streptomyces europaeiscabiei showcases a versatile profile with applications spanning pharmaceutical development, waste treatment, and biofuel production, making it a valuable organism in various industrial contexts.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	google/gemini-flash-1.5	google/gemini-pro	meta-llama/llama-3-70b-instruct:nitro	google/palm-2-chat-bison-32k	anthropic/claude-3.5-sonnet	mistralai/mistral-7b-instruct	mistralai/mixtral-8x7b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	anthropic/claude-3-haiku:beta	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	google/gemma-7b-it	google/gemma-7b-it	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	openchat/openchat-7b	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain variable ✗	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true
Animal pathogenicity	FALSE	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 3 ✗	biosafety level 3 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	false	true	true	true	true	false	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Host association	N/A	true	false	true	false	false	false	true	true	false	false	false	false	false	true	true	false	false	false	false	false	false	true	true	true	true	false	false
Plant pathogenicity	TRUE	true ✓	true ✓	false ✗	true ✓	true ✓	false ✗	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗
Spore formation	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Hemolysis	N/A	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	tail	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗

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