Burkholderia stagnalis

General Information

Burkholderia stagnalis is a fascinating microorganism belonging to the genus Burkholderia, which is known for its metabolic versatility and environmental adaptability. This species is particularly interesting due to its ability to degrade a wide range of organic compounds, making it valuable for bioremediation efforts. One of the unique aspects of B. stagnalis is its potential role in the biodegradation of pollutants. It has been studied for its capacity to break down complex organic molecules, including various hydrocarbons and pesticides, which are common environmental contaminants. This makes it a promising candidate for cleaning up polluted environments, such as soil and water bodies affected by industrial waste. Additionally, B. stagnalis is notable for its interaction with plant roots, where it can promote plant growth by facilitating nutrient uptake or by producing growth-promoting substances. This symbiotic relationship highlights its potential use in sustainable agriculture, where it could help reduce the need for chemical fertilizers. From a research perspective, B. stagnalis is also valuable due to its genetic diversity and adaptability. Studies on its genome have revealed a complex regulatory network that allows it to thrive in various environments, from aquatic habitats to soil ecosystems. This adaptability is of great interest to scientists studying microbial ecology and evolution. In summary, Burkholderia stagnalis stands out for its bioremediation potential, plant growth-promoting properties, and genetic adaptability, making it a significant organism for environmental and agricultural research.

Burkholderia stagnalis is a fascinating bacterium that has garnered attention due to its unique ecological niche and potential applications in bioremediation. This species is primarily found in aquatic environments, particularly in stagnant water bodies, which is reflected in its name. Its ability to thrive in such conditions makes it an interesting subject for studying microbial adaptation and survival strategies in low-nutrient environments. One of the most notable characteristics of Burkholderia stagnalis is its metabolic versatility. It possesses the capability to degrade a variety of organic compounds, including some that are toxic to other organisms. This trait positions it as a valuable candidate for bioremediation efforts, particularly in the cleanup of contaminated water sources. Researchers are particularly interested in its potential to break down pollutants such as hydrocarbons and heavy metals, which are prevalent in industrial waste. Additionally, Burkholderia stagnalis is part of a larger group of Burkholderia species known for their complex interactions with plants. Some strains have been shown to promote plant growth, making them of interest in agricultural research. Understanding the mechanisms behind these interactions could lead to the development of sustainable agricultural practices that utilize beneficial microbes to enhance crop yields. Furthermore, the genomic and metabolic pathways of Burkholderia stagnalis are subjects of ongoing research, as they may reveal insights into microbial ecology and evolution. The study of this organism contributes to our understanding of biodiversity in aquatic ecosystems and the role of bacteria in nutrient cycling. In summary, Burkholderia stagnalis stands out due to its ecological adaptability, potential for bioremediation, and beneficial interactions with plants, making it a significant organism for both environmental and agricultural research.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Betaproteobacteria

Order: Burkholderiales

Family: Burkholderiaceae

Genus: Burkholderia

Species: Burkholderia stagnalis

NCBI ID

1503054

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/718/955/GCF_001718955.1_ASM171895v1

File for sequence-based predictions:
GCF_001718955.1_ASM171895v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Burkholderia stagnalis is a member of the Burkholderia genus, which is known for its diverse ecological roles and clinical significance. While B. stagnalis is less studied compared to its relatives, it has been associated with various clinical implications. It is primarily recognized for its potential pathogenicity, particularly in immunocompromised individuals. Infections caused by B. stagnalis can lead to respiratory infections, wound infections, and bacteremia, especially in patients with underlying health conditions. One of the notable features of B. stagnalis is its ability to exhibit antimicrobial resistance, which poses challenges in treatment. This resistance is often attributed to the presence of efflux pumps and beta-lactamase enzymes, making infections difficult to manage with standard antibiotic therapies. The organism's role in biofilm formation also contributes to its persistence in clinical settings, further complicating treatment strategies. In terms of immune evasion, B. stagnalis can manipulate host immune responses, allowing it to survive and thrive in hostile environments. This includes the production of virulence factors that inhibit phagocytosis and modulate inflammatory responses. While there are no widely recognized medical applications of B. stagnalis as a probiotic or therapeutic agent, its close relatives in the Burkholderia genus have been explored for their potential in bioremediation and as biocontrol agents in agriculture. Overall, the clinical relevance of Burkholderia stagnalis underscores the need for continued research to better understand its pathogenic mechanisms and to develop effective treatment options for infections associated with this organism.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Burkholderia stagnalis is a versatile bacterium commonly associated with various freshwater ecosystems and wetland environments. This microorganism thrives in nutrient-rich habitats, often found in sediments and water columns of lakes, rivers, and marshes. Its ability to adapt to fluctuating environmental conditions makes it a significant player in these biomes. In these freshwater habitats, B. stagnalis plays a crucial role in nutrient cycling, particularly in the breakdown of organic matter. This process not only contributes to the decomposition of plant material but also enhances the availability of nutrients for other organisms, thus supporting the overall productivity of the ecosystem. Additionally, Burkholderia stagnalis is known for its symbiotic relationships with various aquatic plants and algae. It can form beneficial associations that promote plant growth by enhancing nutrient uptake, particularly in nitrogen-poor environments. This symbiosis is vital for maintaining the health of wetland ecosystems, where plant diversity is essential for habitat stability and resilience. Furthermore, B. stagnalis exhibits remarkable environmental adaptability, allowing it to survive in conditions that may be inhospitable to other microorganisms. This includes tolerance to varying levels of salinity and pollution, making it an important organism for bioremediation efforts in contaminated freshwater systems. Overall, the presence of Burkholderia stagnalis in these biomes underscores its importance in maintaining ecological balance, supporting biodiversity, and contributing to the health of freshwater ecosystems.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Burkholderia stagnalis has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where B. stagnalis is utilized for its ability to produce enzymes that can be harnessed in biocatalysis processes. These enzymes can facilitate chemical reactions in a more environmentally friendly manner compared to traditional chemical methods. In the realm of waste management, B. stagnalis has demonstrated capabilities in biodegradation of pollutants, particularly in the breakdown of complex organic compounds. This makes it a valuable organism for the treatment of contaminated soils and wastewater, contributing to more sustainable waste management practices. Furthermore, B. stagnalis is being explored for its role in biofuel production. Its metabolic pathways can be leveraged to convert biomass into biofuels through fermentation processes, potentially leading to more efficient and cost-effective biofuel production methods. In pharmaceutical development, the unique metabolic properties of B. stagnalis may be exploited for the synthesis of bioactive compounds, which could lead to the discovery of new drugs or therapeutic agents. The organism's ability to produce secondary metabolites is of particular interest in this field. Overall, Burkholderia stagnalis presents a multifaceted opportunity across various industries, particularly in enhancing sustainability and efficiency through its diverse metabolic capabilities.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	google/gemini-pro-1.5	anthropic/claude-3-haiku:beta	google/gemma-7b-it	google/gemini-pro	google/gemini-flash-1.5	mistralai/mixtral-8x7b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	anthropic/claude-3.5-sonnet	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	openai/gpt-4	openai/gpt-4	openai/gpt-4o	openai/gpt-4o	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	true	true	true	false	true	false	true	false	true	false	false	false	false	false	false	true	true	false	false	true	true	false	false	true	true	false	false
Biosafety level	biosafety level 2	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓
Health association	N/A	true	true	true	true	true	true	true	false	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true	true	true	false	false
Host association	TRUE	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Plant pathogenicity	FALSE	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	gamma	N/A	beta ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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