Superkingdom: Bacteria
Phylum: Pseudomonadota
Class: Alphaproteobacteria
Order: Hyphomicrobiales
Family: Phyllobacteriaceae
Genus: Phyllobacterium
Species: Phyllobacterium sophorae
FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/010/965/GCF_003010965.1_ASM301096v1
File for sequence-based predictions:
GCF_003010965.1_ASM301096v1_genomic.fasta
The bacterium Phyllobacterium sophorae is a member of the family Phyllobacteriaceae and is primarily known for its role in the nitrogen cycle, particularly in symbiotic relationships with plants. While it is not typically associated with human disease, its clinical relevance can be observed in several areas. Research has indicated that Phyllobacterium sophorae may have potential applications in agriculture, particularly in enhancing plant growth and health through nitrogen fixation. This can indirectly impact human health by improving food security and crop yields. In terms of pathogenicity, Phyllobacterium sophorae is generally considered non-pathogenic to humans. However, its interactions with the human microbiome and potential effects on plant-derived food sources warrant further investigation. Understanding its role in the microbiome could provide insights into how it influences human health, particularly in relation to diet and nutrition. Currently, there is limited information regarding antimicrobial resistance associated with Phyllobacterium sophorae. However, as with many environmental bacteria, there is a potential for the development of resistance mechanisms, especially in the context of agricultural use of antibiotics. Monitoring such resistance is crucial to prevent the transfer of resistance genes to pathogenic bacteria. Overall, while Phyllobacterium sophorae does not have direct clinical implications in terms of human disease, its ecological role and potential applications in agriculture highlight its importance in the broader context of human health and environmental sustainability.
Phyllobacterium sophorae is a bacterium commonly associated with the rhizosphere of plants, particularly in the family Fabaceae. This organism thrives in a variety of terrestrial ecosystems, where it plays a crucial role in nutrient cycling and plant health. Its primary habitat includes soil environments that are rich in organic matter, often found in areas with well-drained soils and moderate moisture levels. In the rhizosphere, Phyllobacterium sophorae engages in symbiotic relationships with leguminous plants, aiding in nitrogen fixation. This process is vital for enhancing soil fertility and promoting plant growth, making the bacterium an essential component of the agricultural biome. The presence of Phyllobacterium sophorae can significantly improve the health of crops, particularly in regions where nitrogen availability is limited. Additionally, this microorganism exhibits remarkable environmental adaptability, allowing it to thrive in various soil types, including sandy and clay soils. Its ability to withstand fluctuations in moisture and nutrient levels further underscores its ecological significance. By contributing to the microbial community in the soil, Phyllobacterium sophorae helps maintain the balance of soil ecosystems, supporting a diverse range of plant and microbial life. Overall, Phyllobacterium sophorae is a key player in the terrestrial biome, particularly in agricultural and natural ecosystems, where it fosters plant health and contributes to the sustainability of soil environments.
The microorganism Phyllobacterium sophorae has shown potential in various industrial applications, particularly in the fields of biotechnology, waste management, and pharmaceutical development. This bacterium is known for its ability to engage in nitrogen fixation, which can enhance soil fertility and promote sustainable agricultural practices. By converting atmospheric nitrogen into a form that plants can utilize, Phyllobacterium sophorae contributes to biological nitrogen fixation, reducing the need for chemical fertilizers. In the realm of waste management, Phyllobacterium sophorae has been studied for its role in biodegradation processes. It can help in the breakdown of organic pollutants, making it a valuable asset in the treatment of wastewater and contaminated soils. This capability is particularly important in the context of environmental remediation, where the detoxification of hazardous substances is crucial. Moreover, the enzymatic activities of Phyllobacterium sophorae have implications for pharmaceutical development. The bacterium produces various enzymes that can be harnessed for the synthesis of bioactive compounds, potentially leading to the discovery of new drugs or therapeutic agents. Its metabolic pathways may also be explored for the production of valuable metabolites through fermentation processes. Overall, Phyllobacterium sophorae exemplifies the diverse applications of microorganisms in industry, particularly in enhancing agricultural productivity, improving waste treatment methods, and contributing to the pharmaceutical sector through its biochemical capabilities.
The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.
Literature-based phenotypes: 8
LLM predicted phenotypes: 5
Phenotype | High-quality annotation | meta-llama/llama-3-70b-instruct:nitro | anthropic/claude-3.5-sonnet | google/gemini-pro | mistralai/mistral-7b-instruct | mistralai/mixtral-8x7b-instruct:nitro | meta-llama/llama-3-8b-instruct:nitro | openchat/openchat-7b | anthropic/claude-3-haiku:beta | google/gemini-flash-1.5 | google/gemini-flash-1.5 | microsoft/wizardlm-2-8x22b | microsoft/wizardlm-2-8x22b | google/gemini-pro-1.5 | google/gemini-pro-1.5 | google/gemma-7b-it | google/gemma-7b-it | openai/gpt-3.5-turbo-0125 | openai/gpt-3.5-turbo-0125 | google/palm-2-chat-bison-32k | google/palm-2-chat-bison-32k | perplexity/llama-3-sonar-small-32k-chat | perplexity/llama-3-sonar-small-32k-chat | openai/gpt-4 | openai/gpt-4 | openai/gpt-4o | openai/gpt-4o | microsoft/phi-3-mini-128k-instruct | microsoft/phi-3-mini-128k-instruct |
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Motility | TRUE | true ✓ | true ✓ | true ✓ | true ✓ | false ✗ | true ✓ | false ✗ | true ✓ | false ✗ | false ✗ | false ✗ | false ✗ | true ✓ | true ✓ | true ✓ | true ✓ | true ✓ | true ✓ | true ✓ | true ✓ | true ✓ | true ✓ | true ✓ | true ✓ | true ✓ | true ✓ | true ✓ | true ✓ |
Gram staining | gram stain negative | gram stain negative ✓ | gram stain negative ✓ | gram stain negative ✓ | gram stain negative ✓ | gram stain negative ✓ | gram stain negative ✓ | gram stain negative ✓ | gram stain negative ✓ | N/A | gram stain negative ✓ | N/A | gram stain negative ✓ | N/A | gram stain negative ✓ | N/A | gram stain negative ✓ | N/A | gram stain negative ✓ | N/A | gram stain negative ✓ | N/A | gram stain negative ✓ | N/A | gram stain negative ✓ | N/A | gram stain negative ✓ | N/A | gram stain negative ✓ |
Aerophilicity | aerobic | aerobic ✓ | aerobic ✓ | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | aerobic ✓ | aerobic ✓ | aerobic ✓ | aerobic ✓ | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A |
Extreme environment tolerance | FALSE | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | true ✗ | true ✗ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ |
Biofilm formation | N/A | true | true | true | true | true | true | false | true | true | true | true | true | true | true | true | true | true | true | true | true | true | true | true | true | true | true | false | false |
Animal pathogenicity | N/A | false | false | false | false | false | false | false | false | false | false | false | false | false | false | false | false | false | false | false | false | false | false | false | false | false | false | false | false |
Biosafety level | biosafety level 1 | biosafety level 1 ✓ | biosafety level 1 ✓ | biosafety level 1 ✓ | biosafety level 1 ✓ | biosafety level 1 ✓ | biosafety level 1 ✓ | biosafety level 2 ✗ | biosafety level 1 ✓ | biosafety level 1 ✓ | biosafety level 1 ✓ | biosafety level 1 ✓ | biosafety level 1 ✓ | biosafety level 1 ✓ | biosafety level 1 ✓ | biosafety level 1 ✓ | biosafety level 1 ✓ | biosafety level 1 ✓ | biosafety level 1 ✓ | biosafety level 1 ✓ | biosafety level 1 ✓ | biosafety level 1 ✓ | biosafety level 1 ✓ | biosafety level 1 ✓ | biosafety level 1 ✓ | biosafety level 1 ✓ | biosafety level 1 ✓ | biosafety level 1 ✓ | biosafety level 1 ✓ |
Health association | N/A | true | true | true | true | true | false | true | true | true | true | true | true | true | true | false | false | false | false | true | true | true | true | true | true | true | true | true | true |
Host association | N/A | false | false | false | true | true | false | false | false | true | true | false | false | false | false | false | false | false | false | false | false | true | true | false | false | false | false | true | true |
Plant pathogenicity | FALSE | true ✗ | false ✓ | true ✗ | true ✗ | true ✗ | true ✗ | true ✗ | true ✗ | false ✓ | false ✓ | false ✓ | false ✓ | true ✗ | true ✗ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | true ✗ | true ✗ | true ✗ | true ✗ | true ✗ | true ✗ |
Spore formation | FALSE | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ | false ✓ |
Hemolysis | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | gamma | gamma | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A | N/A |
Cell shape | bacillus | bacillus ✓ | bacillus ✓ | bacillus ✓ | bacillus ✓ | bacillus ✓ | bacillus ✓ | bacillus ✓ | bacillus ✓ | bacillus ✓ | bacillus ✓ | bacillus ✓ | bacillus ✓ | bacillus ✓ | bacillus ✓ | bacillus ✓ | bacillus ✓ | bacillus ✓ | bacillus ✓ | bacillus ✓ | bacillus ✓ | coccus ✗ | coccus ✗ | bacillus ✓ | bacillus ✓ | bacillus ✓ | bacillus ✓ | bacillus ✓ | bacillus ✓ |