Sphingomonas melonis

General Information

Sphingomonas melonis is a fascinating microorganism belonging to the genus Sphingomonas, which is known for its unique lipid composition, particularly the presence of glycosphingolipids in its cell membrane. This characteristic sets it apart from many other bacteria that typically have phospholipids in their membranes. One of the most intriguing aspects of Sphingomonas melonis is its role in plant-microbe interactions. It has been isolated from the phyllosphere, the aerial parts of plants, and is known to be associated with various plant species, including melons, from which it derives its name. From a research perspective, Sphingomonas melonis is valuable due to its potential in bioremediation. Members of the Sphingomonas genus are renowned for their ability to degrade a wide range of environmental pollutants, including polycyclic aromatic hydrocarbons (PAHs) and other complex organic compounds. This makes Sphingomonas melonis a candidate for studies focused on environmental cleanup and sustainable agricultural practices. Additionally, Sphingomonas melonis exhibits a high degree of metabolic versatility, allowing it to thrive in diverse environments. This adaptability is of particular interest in microbial ecology and evolutionary biology, as it provides insights into how bacteria can colonize and persist in various niches. Another noteworthy feature of Sphingomonas melonis is its potential use in biotechnology. The unique enzymes produced by this bacterium can be harnessed for industrial applications, including the synthesis of bioactive compounds and the biotransformation of organic materials. In summary, Sphingomonas melonis is a microorganism of significant interest due to its unique lipid composition, its role in plant-microbe interactions, its potential in bioremediation, and its biotechnological applications. These characteristics make it a valuable subject for ongoing and future research in multiple scientific disciplines.

Sphingomonas melonis is a fascinating bacterium belonging to the genus Sphingomonas, which is known for its unique lipid composition and metabolic versatility. This organism is particularly interesting due to its ability to degrade a variety of environmental pollutants, making it a valuable candidate for bioremediation efforts. Its capacity to metabolize complex organic compounds allows it to thrive in diverse environments, including soil and aquatic systems, where it plays a crucial role in nutrient cycling. One of the standout features of Sphingomonas melonis is its production of sphingolipids, which are not only integral to its cellular structure but also contribute to its adaptability in various ecological niches. These lipids have garnered attention in research for their potential applications in biotechnology and medicine, particularly in the development of novel antimicrobial agents. Additionally, Sphingomonas melonis has been studied for its interactions with plants, where it may promote growth and enhance resistance to pathogens. This symbiotic relationship highlights its potential in sustainable agriculture, offering a natural alternative to chemical fertilizers and pesticides. The organism's unique metabolic pathways and ecological roles make it a subject of interest for researchers aiming to harness its capabilities for environmental and agricultural applications.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Alphaproteobacteria

Order: Sphingomonadales

Family: Sphingomonadaceae

Genus: Sphingomonas

Species: Sphingomonas melonis

NCBI ID

152682

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/504/265/GCF_002504265.1_ASM250426v1

File for sequence-based predictions:
GCF_002504265.1_ASM250426v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Sphingomonas melonis is a member of the Sphingomonadaceae family and has garnered attention due to its potential clinical implications. It is primarily known for its role in environmental microbiology, particularly in the degradation of pollutants, but its relevance in human health is becoming increasingly recognized. Clinical associations with Sphingomonas melonis include its identification in various clinical specimens, suggesting a possible role in infections, although definitive pathogenicity has not been firmly established. One of the notable aspects of Sphingomonas melonis is its potential to exhibit antimicrobial resistance. Studies have indicated that this organism may possess resistance mechanisms that could complicate treatment options, particularly in immunocompromised patients. The presence of this organism in clinical settings raises concerns about its ability to evade the immune response, which may be linked to its unique lipid composition and metabolic capabilities. While there are no widely recognized medical applications such as probiotics or vaccines specifically associated with Sphingomonas melonis, its role in bioremediation and environmental health underscores its importance in the broader context of microbial interactions with human health. Further research is needed to fully elucidate its clinical significance and potential implications in human disease.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Sphingomonas melonis is a bacterium commonly associated with various habitat types that reflect its ecological versatility. This microorganism is primarily found in soil and water environments, particularly in areas rich in organic matter. Its presence is often noted in agricultural soils, where it plays a significant role in the decomposition of organic materials, contributing to nutrient cycling and soil health. This bacterium is known for its ability to degrade complex organic compounds, which makes it an important player in the breakdown of pollutants and organic waste in these environments. In addition to terrestrial habitats, Sphingomonas melonis has been identified in aquatic ecosystems, including freshwater and marine environments. Here, it can thrive in biofilms on surfaces submerged in water, where it interacts with other microorganisms. These interactions can lead to symbiotic relationships, enhancing the overall microbial community's resilience and functionality. Furthermore, Sphingomonas melonis exhibits remarkable environmental adaptability, allowing it to survive in varying conditions, including those with high levels of pollutants. This adaptability not only underscores its ecological importance but also highlights its potential use in bioremediation efforts, where it can help mitigate environmental contamination. Overall, Sphingomonas melonis is a key organism in both soil and aquatic biomes, contributing to ecological balance and health through its diverse interactions and roles.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The bacterium Sphingomonas melonis has shown significant potential in various industrial applications due to its unique metabolic capabilities. One of the most notable areas is in biotechnology, where Sphingomonas melonis is utilized for its ability to degrade complex organic compounds, making it valuable in biodegradation processes. This characteristic is particularly useful in waste management, where the organism can help in the breakdown of pollutants and contaminants in soil and water, contributing to environmental cleanup efforts. In the realm of biofuel production, Sphingomonas melonis has been studied for its capacity to metabolize plant-derived materials, which can be harnessed in fermentation processes to produce bioethanol and other biofuels. This application is crucial as it supports the development of sustainable energy sources and reduces reliance on fossil fuels. Furthermore, the enzymatic activities of Sphingomonas melonis have implications in pharmaceutical development. The organism is known to produce specific enzymes that can be utilized in the synthesis of pharmaceutical compounds, enhancing the efficiency of drug production processes. Overall, Sphingomonas melonis exemplifies the potential of microorganisms in advancing green technologies and promoting sustainable industrial practices through its diverse applications in biodegradation, fermentation, and enzyme production.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 11

LLM predicted phenotypes: 2

Phenotype	High-quality annotation	google/gemma-7b-it	meta-llama/llama-3-70b-instruct:nitro	anthropic/claude-3.5-sonnet	mistralai/mistral-7b-instruct	google/palm-2-chat-bison-32k	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	anthropic/claude-3-haiku:beta	google/gemini-flash-1.5	google/gemini-flash-1.5	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	google/gemini-pro	google/gemini-pro	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	N/A	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Biofilm formation	FALSE	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Animal pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	false	true	false	false	true	false	true	true	true	true	false	false	true	true	true	true	true	true	true	true	false	false	true	true	true	true
Host association	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	TRUE	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	gamma	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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