Vibrio hyugaensis

General Information

Vibrio hyugaensis is a fascinating microorganism that belongs to the genus Vibrio, which is well-known for its diverse and ecologically significant species. This particular species was first isolated from seawater in Hyuga, Japan, which is reflected in its name. One of the most intriguing aspects of Vibrio hyugaensis is its ability to thrive in marine environments, making it an important subject of study in marine microbiology and ecology. Vibrio hyugaensis is notable for its bioluminescent properties, a characteristic that is not only visually striking but also of significant interest for scientific research. Bioluminescence in marine bacteria like Vibrio hyugaensis can play a role in symbiotic relationships with marine animals, such as fish and squid, providing them with light for communication, predation, or camouflage. Another valuable trait of Vibrio hyugaensis is its potential in biotechnological applications. The enzymes and metabolic pathways involved in its bioluminescence and other biochemical processes can be harnessed for various industrial and medical purposes. For instance, bioluminescent markers derived from Vibrio species are widely used in molecular biology for tracking gene expression and cellular processes. Furthermore, Vibrio hyugaensis contributes to our understanding of microbial diversity and adaptation in marine ecosystems. Studying its genetic makeup and physiological responses to different environmental conditions can provide insights into how marine bacteria adapt to changing oceanic environments, which is crucial in the context of global climate change. In summary, Vibrio hyugaensis is a remarkable microorganism with unique bioluminescent properties, significant ecological roles, and promising biotechnological applications. Its study not only enhances our understanding of marine microbial ecology but also opens up new avenues for scientific and industrial innovation.

Vibrio hyugaensis is a fascinating marine bacterium that was first isolated from seawater in Japan. This organism is particularly interesting due to its halophilic nature, thriving in high-salinity environments, which makes it a valuable model for studying salt tolerance mechanisms in bacteria. Its ability to adapt to extreme osmotic conditions provides insights into the evolutionary processes that allow microorganisms to inhabit diverse ecological niches. One of the unique aspects of Vibrio hyugaensis is its potential for biotechnological applications. Research has indicated that this species may produce various bioactive compounds, which could have implications in pharmaceuticals and agriculture. The exploration of its metabolic pathways could lead to the discovery of novel enzymes or antimicrobial agents, making it a subject of interest for drug development. Additionally, Vibrio hyugaensis is part of the larger Vibrio genus, which includes several species known for their pathogenicity. However, V. hyugaensis itself has not been associated with human disease, allowing researchers to study its biology without the ethical concerns associated with pathogenic strains. This characteristic positions it as a safe alternative for laboratory studies focused on understanding the ecology and physiology of marine bacteria. In summary, Vibrio hyugaensis stands out due to its halophilic adaptations, potential for biotechnological innovations, and its role as a non-pathogenic model organism, making it a valuable subject for ongoing research in microbiology and environmental science.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Vibrionales

Family: Vibrionaceae

Genus: Vibrio

Species: Vibrio hyugaensis

NCBI ID

1534743

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/906/655/GCF_002906655.1_ASM290665v1

File for sequence-based predictions:
GCF_002906655.1_ASM290665v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The bacterium Vibrio hyugaensis is a marine microorganism that has been associated with various clinical implications, particularly in the context of infections related to seafood consumption. It is known to inhabit coastal waters and can be found in raw or undercooked seafood, which poses a risk for gastroenteritis in humans. Clinical cases have reported symptoms such as diarrhea, abdominal pain, and vomiting, particularly in immunocompromised individuals or those with underlying health conditions. Pathogenicity of Vibrio hyugaensis is attributed to its ability to produce virulence factors that facilitate colonization and invasion of the intestinal mucosa. The organism's immune evasion strategies may include the production of biofilms and the secretion of proteases that can degrade host immune components. In terms of antimicrobial resistance, there is growing concern regarding the resistance patterns of Vibrio species, including Vibrio hyugaensis. Reports indicate that some strains exhibit resistance to commonly used antibiotics, which complicates treatment options for affected patients. While Vibrio hyugaensis is primarily recognized for its role in foodborne infections, it also highlights the importance of monitoring marine environments for potential outbreaks. Public health measures, such as proper cooking of seafood and awareness of the risks associated with raw seafood consumption, are crucial in preventing infections caused by this organism.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Vibrio hyugaensis is a marine bacterium primarily associated with coastal and estuarine environments. This microorganism thrives in brackish waters, where it plays a significant role in the nutrient cycling of these ecosystems. Its presence is often linked to mangrove forests and salt marshes, where it contributes to the breakdown of organic matter and the recycling of nutrients, thus supporting the overall health of these habitats. In these biomes, Vibrio hyugaensis exhibits notable interactions with its surroundings. It is known to engage in symbiotic relationships with various marine organisms, including fish and invertebrates, where it can aid in digestion or provide protection against pathogens. This bacterium is also involved in biofilm formation, which can enhance the stability of microbial communities in these dynamic environments. Furthermore, Vibrio hyugaensis demonstrates remarkable environmental adaptability, allowing it to thrive in varying salinity levels and temperatures typical of coastal regions. Its ability to withstand fluctuations in these conditions makes it a resilient component of the marine microbiome, contributing to the ecological balance and health of its habitat.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Vibrio hyugaensis has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where Vibrio hyugaensis is utilized for its ability to produce enzymes that can be harnessed in biocatalysis processes. These enzymes are particularly valuable in the food industry for applications such as fermentation, where they can enhance the flavor and preservation of food products. In the realm of waste management, Vibrio hyugaensis has demonstrated capabilities in biodegradation, particularly in the breakdown of organic pollutants in marine environments. This property makes it a candidate for bioremediation efforts aimed at cleaning up oil spills and other contaminants in aquatic ecosystems. Furthermore, the organism has been explored for its potential in biofuel production. Its metabolic pathways can be leveraged to convert organic materials into biofuels through fermentation processes, contributing to sustainable energy solutions. In pharmaceutical development, Vibrio hyugaensis is of interest due to its production of bioactive compounds that may have antimicrobial properties. Research is ongoing to isolate these compounds for potential use in developing new antibiotics or other therapeutic agents. Overall, Vibrio hyugaensis presents a multifaceted opportunity across various industries, particularly in enhancing processes related to fermentation, biodegradation, and enzyme production, making it a valuable organism in the field of industrial microbiology.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	meta-llama/llama-3-70b-instruct:nitro	google/gemini-pro	google/palm-2-chat-bison-32k	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	mistralai/mistral-7b-instruct	meta-llama/llama-3-8b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/gemini-flash-1.5	google/gemini-flash-1.5	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	openai/gpt-4	openai/gpt-4	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	anthropic/claude-3-haiku:beta	anthropic/claude-3-haiku:beta	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain variable ✗
Aerophilicity	N/A	facultatively anaerobic	N/A	N/A	facultatively anaerobic	facultatively anaerobic	facultatively anaerobic	N/A	N/A	N/A	N/A	facultatively anaerobic	facultatively anaerobic	N/A	N/A	facultatively anaerobic	facultatively anaerobic	facultatively anaerobic	facultatively anaerobic	facultatively anaerobic	facultatively anaerobic	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗
Biosafety level	biosafety level 1	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	true	true	true	true	true	true	false	true	true	false	false	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Host association	FALSE	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	beta	gamma	beta	beta	beta	N/A	N/A	N/A	N/A	N/A	N/A	N/A	beta	beta	N/A	N/A	N/A	N/A	N/A	N/A	beta	beta	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	spirillum ✗	spirillum ✗

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