Trichococcus collinsii

General Information

Trichococcus collinsii is a fascinating microorganism that belongs to the genus Trichococcus. This bacterium is particularly interesting due to its ability to thrive in a variety of extreme environments, including cold and saline conditions. One of the most notable features of T. collinsii is its psychrotolerant nature, meaning it can grow at low temperatures, which makes it valuable for studying microbial life in cold ecosystems such as Arctic and Antarctic regions. Additionally, T. collinsii has been isolated from diverse habitats, including wastewater treatment plants and anaerobic digesters, highlighting its ecological versatility. This adaptability is of significant interest for biotechnological applications, particularly in the field of waste management and bioremediation. The bacterium's ability to degrade complex organic compounds under anaerobic conditions can be harnessed to improve the efficiency of biogas production and the treatment of organic waste. Moreover, T. collinsii is known for its unique metabolic pathways, which include the fermentation of carbohydrates to produce various organic acids and alcohols. This metabolic flexibility not only underscores its ecological importance but also its potential utility in industrial processes, such as the production of biofuels and biochemicals. In summary, Trichococcus collinsii stands out due to its psychrotolerant capabilities, ecological versatility, and metabolic diversity, making it a valuable subject for research in environmental microbiology and biotechnology.*

Trichococcus collinsii is a fascinating member of the genus Trichococcus, notable for its unique ecological niche and metabolic capabilities. This microorganism is primarily found in anaerobic environments, particularly in the digestive tracts of ruminants, where it plays a crucial role in the degradation of complex carbohydrates. Its ability to ferment a variety of polysaccharides makes it an important player in the microbial ecosystem of the gut, contributing to the overall health and digestion of its host. One of the most interesting aspects of T. collinsii is its potential for biotechnological applications. Research has shown that this organism can produce significant amounts of short-chain fatty acids (SCFAs), which are beneficial for gut health and can serve as energy sources for the host. The production of SCFAs is particularly valuable in the context of animal husbandry, as it can enhance feed efficiency and promote better growth rates in livestock. Furthermore, T. collinsii has garnered attention for its potential in the field of renewable energy. The metabolic pathways utilized by this microorganism for the fermentation of organic matter could be harnessed for the production of biofuels, making it a candidate for further research in sustainable energy solutions. In summary, Trichococcus collinsii stands out not only for its ecological significance in the digestive systems of ruminants but also for its promising applications in biotechnology and renewable energy, making it a valuable subject for ongoing research.

Taxonomy

Superkingdom: Bacteria

Phylum: Bacillota

Class: Bacilli

Order: Lactobacillales

Family: Carnobacteriaceae

Genus: Trichococcus

Species: Trichococcus collinsii

NCBI ID

157076

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/067/155/GCA_900067155.1_ASM90006715v1

File for sequence-based predictions:
GCA_900067155.1_ASM90006715v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Trichococcus collinsii is a Gram-positive, anaerobic bacterium that has been identified in the human gut microbiome. Its clinical implications are primarily associated with its role in human health and potential disease associations. While T. collinsii is generally considered a commensal organism, its presence in the gut may influence immune responses and metabolic processes. Alterations in gut microbiota, including the abundance of T. collinsii, have been linked to various gastrointestinal disorders, although specific pathogenicity has not been conclusively established. In terms of antimicrobial resistance, there is limited data available on T. collinsii, but like many gut bacteria, it may possess mechanisms that confer resistance to certain antibiotics, which is a growing concern in clinical settings. Understanding the interactions of T. collinsii with other gut microbiota is crucial, as it may play a role in maintaining gut homeostasis or contributing to dysbiosis, which can lead to conditions such as inflammatory bowel disease (IBD) or irritable bowel syndrome (IBS). Currently, there are no known medical applications such as probiotics or vaccines specifically targeting T. collinsii, but its study may contribute to the broader understanding of gut health and the development of therapeutic strategies aimed at restoring a healthy microbiome. Further research is needed to elucidate its exact role in immune evasion and its potential involvement in any known outbreaks or infections.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Trichococcus collinsii is a notable microorganism primarily associated with anaerobic environments such as wetlands and sedimentary layers of aquatic ecosystems. This bacterium thrives in microbial mats and biofilms, where it plays a crucial role in the degradation of organic matter. Its ability to metabolize complex carbohydrates makes it an essential player in the nutrient cycling processes within these biomes. In wetland ecosystems, Trichococcus collinsii contributes to the breakdown of plant material, facilitating the release of nutrients back into the environment. This process not only supports the growth of other microorganisms but also enhances the overall productivity of the ecosystem. The presence of this bacterium can indicate the health of the wetland, as it is often found in areas with rich organic content. Furthermore, Trichococcus collinsii exhibits symbiotic relationships with other microorganisms, particularly in anaerobic digesters, where it aids in the fermentation process. This interaction is vital for the efficient conversion of organic waste into biogas, showcasing its importance in both natural and engineered environments. Overall, Trichococcus collinsii is adapted to thrive in low-oxygen conditions, making it a key organism in the ecological dynamics of its associated biomes.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Trichococcus collinsii has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where T. collinsii is utilized in fermentation processes to produce valuable metabolites. This organism is known for its ability to ferment a range of carbohydrates, making it a candidate for the production of biofuels, particularly in the conversion of biomass into ethanol. In the realm of waste management, T. collinsii has demonstrated capabilities in biodegradation, particularly in the breakdown of complex organic materials. This property is beneficial for the treatment of wastewater, where the microorganism can help in the degradation of pollutants, thus contributing to cleaner effluents. Furthermore, the enzymatic activity of T. collinsii is noteworthy, as it produces various enzymes that can be harnessed in pharmaceutical development. These enzymes can be used in the synthesis of pharmaceutical compounds, enhancing the efficiency of drug production processes. Overall, Trichococcus collinsii presents a multifaceted approach to addressing industrial challenges, particularly in biofuel production, waste treatment, and enzyme production, making it a valuable organism in the field of industrial microbiology.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	google/gemini-flash-1.5	mistralai/mistral-7b-instruct	mistralai/mixtral-8x7b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	google/gemini-pro-1.5	google/gemma-7b-it	meta-llama/llama-3-70b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	google/gemini-pro	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openai/gpt-4o	openai/gpt-4o	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	anthropic/claude-3-haiku:beta	anthropic/claude-3-haiku:beta
Motility	FALSE	false ✓	true ✗	false ✓	true ✗	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Gram staining	gram stain positive	gram stain positive ✓	gram stain variable ✗	gram stain positive ✓	gram stain negative ✗	gram stain positive ✓	gram stain negative ✗	gram stain positive ✓	gram stain negative ✗	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain variable ✗	N/A	gram stain positive ✓
Aerophilicity	anaerobic	aerobic ✗	aerotolerant ✗	facultatively anaerobic ✗	aerotolerant ✗	anaerobic ✓	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	anaerobic ✓	anaerobic ✓	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	false	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	false	false	false	false	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	false	false	true	false	true	true	true	true	true	true	true	false	false	false	false	true	true	false	false	true	true	false	false	false	false	true	true
Host association	N/A	false	false	true	false	false	false	true	true	true	true	true	false	false	false	false	true	true	false	false	false	false	false	false	true	true	false	false
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	coccus	coccus ✓	bacillus ✗	coccus ✓	coccus ✓	coccus ✓	bacillus ✗	coccus ✓	bacillus ✗	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓

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