Comamonas koreensis

General Information

Comamonas koreensis is a fascinating microorganism that belongs to the genus Comamonas. This bacterium is particularly interesting due to its biodegradation capabilities. It has been studied for its ability to break down various environmental pollutants, making it a valuable organism in the field of bioremediation. One of the most notable features of C. koreensis is its ability to degrade aromatic hydrocarbons, which are common pollutants found in industrial waste. This capability is not only crucial for cleaning up contaminated environments but also for understanding the metabolic pathways involved in the degradation process. Researchers have been particularly interested in the enzymes produced by C. koreensis that facilitate these biochemical reactions. Another unique aspect of Comamonas koreensis is its potential application in wastewater treatment. The bacterium's efficiency in breaking down complex organic compounds makes it a promising candidate for improving the effectiveness of wastewater treatment plants. Studies have shown that C. koreensis can thrive in various environmental conditions, which adds to its versatility and potential for widespread application. In addition to its environmental applications, C. koreensis has also been explored for its role in plant growth promotion. Some strains of this bacterium have been found to produce plant growth-promoting substances, which can enhance the growth and health of crops. This makes C. koreensis a potential biofertilizer, contributing to sustainable agricultural practices. Overall, Comamonas koreensis stands out due to its biodegradation abilities, environmental versatility, and potential applications in both bioremediation and agriculture. Its unique characteristics make it a valuable subject of study for researchers aiming to address environmental pollution and improve sustainable practices.

Comamonas koreensis is a fascinating bacterium belonging to the genus Comamonas, which is known for its diverse metabolic capabilities. This species was first isolated from activated sludge, highlighting its role in wastewater treatment processes. One of the most interesting aspects of C. koreensis is its ability to degrade a variety of environmental pollutants, including aromatic compounds, which makes it a valuable organism in bioremediation efforts. This characteristic positions C. koreensis as a potential candidate for the development of biotechnological applications aimed at environmental cleanup. Another unique feature of C. koreensis is its capacity to utilize a wide range of carbon sources, which allows it to thrive in various ecological niches. This metabolic versatility not only contributes to its survival in diverse environments but also makes it an interesting subject for studies on microbial ecology and evolution. Research into the metabolic pathways of C. koreensis could provide insights into the mechanisms of pollutant degradation and the potential for harnessing these pathways for industrial applications. Furthermore, C. koreensis has been studied for its interactions with other microorganisms, which can influence community dynamics in microbial ecosystems. Understanding these interactions can shed light on the complexities of microbial communities and their roles in nutrient cycling and ecosystem functioning. The study of C. koreensis thus offers a window into the intricate relationships that define microbial life and its impact on the environment.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Betaproteobacteria

Order: Burkholderiales

Family: Comamonadaceae

Genus: Comamonas

Species: Comamonas koreensis

NCBI ID

160825

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/076/495/GCA_014076495.1_ASM1407649v1

File for sequence-based predictions:
GCA_014076495.1_ASM1407649v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The bacterium Comamonas koreensis is a member of the Comamonadaceae family and has been studied for its potential clinical implications. It is primarily known for its role in environmental microbiology, particularly in the degradation of pollutants. However, its relevance in human health is emerging, particularly in relation to infections and pathogenicity. One of the notable aspects of C. koreensis is its association with opportunistic infections, particularly in immunocompromised patients. There have been documented cases where it has been isolated from clinical specimens, indicating its potential as a pathogen in certain contexts. The organism's ability to survive in various environments suggests it may possess virulence factors that allow it to evade the immune response of the host. In terms of antimicrobial resistance, there is limited data available, but like many environmental bacteria, C. koreensis may harbor resistance genes that could complicate treatment options. This is particularly concerning in hospital settings where antibiotic use is prevalent, and resistant strains can emerge. While C. koreensis is not widely recognized as a major human pathogen, its presence in clinical samples highlights the importance of monitoring environmental bacteria for potential health risks. Further research is needed to fully understand its pathogenic mechanisms and any potential therapeutic applications, such as its use in bioremediation or as a model organism for studying bacterial behavior in human-associated environments.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Comamonas koreensis is a species of bacteria that is primarily associated with freshwater environments and soil ecosystems. This microorganism thrives in nutrient-rich conditions, often found in areas where organic matter is abundant, such as in sediments of rivers and lakes. Its ecological niche is characterized by its ability to degrade various organic compounds, making it an important player in the biogeochemical cycling of nutrients, particularly in the breakdown of pollutants and organic waste. In terms of habitat, C. koreensis is commonly isolated from activated sludge in wastewater treatment plants, where it contributes to the microbial community responsible for the degradation of organic pollutants. This bacterium exhibits a notable role in symbiotic relationships with other microorganisms, enhancing the overall efficiency of nutrient cycling and organic matter decomposition. Furthermore, C. koreensis has shown adaptability to varying environmental conditions, including fluctuations in temperature and pH, which allows it to thrive in diverse habitats. Its presence in soil ecosystems also indicates its role in promoting soil health by participating in the decomposition of organic materials and contributing to nutrient availability for plants. Overall, Comamonas koreensis is a vital microorganism within its associated biomes, playing a significant role in maintaining ecological balance and promoting environmental sustainability.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The bacterium Comamonas koreensis has shown significant potential in various industrial applications, particularly in the fields of biotechnology, waste management, and bioremediation. This microorganism is known for its ability to degrade a wide range of pollutants, making it a valuable asset in waste treatment processes. For instance, Comamonas koreensis can effectively break down aromatic compounds, which are often found in industrial waste, thus contributing to the detoxification of contaminated environments. In the realm of biofuel production, Comamonas koreensis has been studied for its capacity to ferment organic materials, leading to the generation of bioethanol. The organism's metabolic pathways allow it to convert sugars derived from biomass into ethanol through fermentation, providing a sustainable alternative to fossil fuels. Moreover, this microorganism is also involved in pharmaceutical development due to its enzymatic activities. It produces various enzymes that can be harnessed for the synthesis of pharmaceutical compounds, enhancing the efficiency of drug production processes. The ability of Comamonas koreensis to produce specific enzymes makes it a candidate for enzyme production, which is crucial in the pharmaceutical industry. Overall, Comamonas koreensis exemplifies the versatility of microorganisms in addressing environmental challenges and contributing to sustainable industrial practices.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	google/gemini-flash-1.5	anthropic/claude-3.5-sonnet	microsoft/phi-3-mini-128k-instruct	google/gemini-pro	google/gemma-7b-it	meta-llama/llama-3-70b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	anthropic/claude-3-haiku:beta	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/gemini-pro-1.5	google/gemini-pro-1.5	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	openai/gpt-4	openai/gpt-4	openchat/openchat-7b	openchat/openchat-7b	openai/gpt-4o	openai/gpt-4o
Motility	FALSE	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	N/A	aerobic ✓	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	facultatively anaerobic ✗	facultatively anaerobic ✗	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	false	false	false	false	false	false	false	false	false	false	false	true	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	false	false	false	true	true	true	true	false	false	true	true	true	true	false	false	false	false	false	false	true	true	false	false	true	true	true	true
Host association	N/A	true	false	false	false	false	true	true	false	false	false	true	true	true	true	false	false	true	true	false	false	true	true	false	false	false	false	false	false
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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