Chryseobacterium rhizoplanae

General Information

Chryseobacterium rhizoplanae is a fascinating microorganism that belongs to the genus Chryseobacterium. This genus is known for its diverse metabolic capabilities and environmental adaptability. One of the most intriguing aspects of C. rhizoplanae is its ability to thrive in the rhizosphere, the region of soil that surrounds and is influenced by plant roots. This makes it particularly interesting for studies on plant-microbe interactions and soil health. Chryseobacterium rhizoplanae has been isolated from the rhizoplane of various plants, indicating its potential role in promoting plant growth or protecting plants from pathogens. Its presence in the rhizosphere suggests that it may be involved in nutrient cycling, possibly aiding in the breakdown of organic matter and the release of nutrients that are beneficial to plants. Another notable feature of C. rhizoplanae is its production of bioactive compounds. Members of the Chryseobacterium genus are known to produce a variety of enzymes and secondary metabolites, some of which have antimicrobial properties. This makes C. rhizoplanae a potential candidate for biotechnological applications, such as the development of new antibiotics or biocontrol agents. In addition, C. rhizoplanae exhibits a unique yellow pigmentation, which is due to the production of flexirubin-type pigments. These pigments not only give the bacterium its distinctive color but may also play a role in protecting it from environmental stresses, such as UV radiation. Overall, Chryseobacterium rhizoplanae is a microorganism of significant interest due to its ecological role in the rhizosphere, its potential biotechnological applications, and its unique physiological traits. Further research into this species could uncover new insights into plant-microbe interactions and lead to the development of novel bioproducts.

Chryseobacterium rhizoplanae is a fascinating bacterium that has garnered attention due to its unique ecological niche and potential applications in biotechnology. Isolated from the rhizosphere of plants, this organism plays a significant role in the soil microbiome, contributing to nutrient cycling and plant health. Its ability to thrive in the root zone of plants highlights its importance in promoting plant growth and resilience against pathogens. One of the most interesting aspects of C. rhizoplanae is its production of various bioactive compounds, which can have antimicrobial properties. This characteristic makes it a valuable candidate for research into natural pesticides and biocontrol agents, potentially reducing the reliance on synthetic chemicals in agriculture. The exploration of these compounds could lead to the development of environmentally friendly agricultural practices. Additionally, C. rhizoplanae has been studied for its enzymatic capabilities, particularly in the degradation of complex organic materials. This trait positions it as a potential player in bioremediation efforts, where it could be utilized to break down pollutants in contaminated environments. The ability to metabolize diverse substrates is a key feature that enhances its utility in both environmental and industrial applications. Overall, Chryseobacterium rhizoplanae stands out not only for its ecological significance but also for its promising applications in sustainable agriculture and environmental management, making it a subject of ongoing research interest.

Taxonomy

Superkingdom: Bacteria

Phylum: Bacteroidota

Class: Flavobacteriia

Order: Flavobacteriales

Family: Weeksellaceae

Genus: Chryseobacterium

Species: Chryseobacterium rhizoplanae

NCBI ID

1609531

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/342/415/GCA_020342415.1_ASM2034241v1

File for sequence-based predictions:
GCA_020342415.1_ASM2034241v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Chryseobacterium rhizoplanae is a member of the genus Chryseobacterium, which is known for its environmental presence and potential clinical significance. While specific clinical implications of Chryseobacterium rhizoplanae are not extensively documented, related species within the genus have been associated with various infections in humans, particularly in immunocompromised patients. Clinical relevance may arise from its ability to cause nosocomial infections, particularly in patients with underlying health conditions or those undergoing invasive procedures. Pathogenicity is often linked to the organism's ability to produce biofilms, which can enhance its survival in hospital environments and contribute to antimicrobial resistance mechanisms. Some species in this genus have shown resistance to multiple classes of antibiotics, raising concerns about treatment options for infections caused by these organisms. Furthermore, the genus Chryseobacterium has been implicated in opportunistic infections, such as bacteremia and pneumonia, particularly in patients with compromised immune systems. The potential for Chryseobacterium rhizoplanae to act similarly underscores the need for vigilance in clinical settings. While there is limited information on specific outbreaks directly linked to Chryseobacterium rhizoplanae, its close relatives have been involved in cases of sepsis and other serious infections, highlighting the importance of understanding its role in human health and disease. In summary, while Chryseobacterium rhizoplanae may not be as well-studied as other pathogens, its potential for pathogenicity, association with antimicrobial resistance, and role in opportunistic infections warrant further investigation to fully elucidate its clinical implications.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Chryseobacterium rhizoplanae is a bacterium commonly associated with the rhizosphere of plants, particularly in soil environments. This organism thrives in nutrient-rich soil ecosystems, where it plays a crucial role in the decomposition of organic matter and nutrient cycling. Its presence is often linked to the roots of various plants, indicating its adaptation to the root-associated habitat. Ecological Niches: - _Chryseobacterium rhizoplanae occupies a unique ecological niche within the rhizosphere, where it interacts with plant roots and other soil microorganisms. This bacterium is known for its ability to degrade complex organic compounds, contributing to soil health and fertility. Habitat Features: - The bacterium is typically found in moist, well-aerated soils that support plant growth. It prefers environments that are rich in organic matter, which provides the necessary nutrients for its metabolic processes. Interactions with Surroundings: - This microorganism engages in mutualistic relationships with plants, enhancing nutrient uptake and promoting plant growth. By breaking down organic materials, it releases essential nutrients back into the soil, which can be utilized by plants. - Additionally, Chryseobacterium rhizoplanae may exhibit antagonistic behavior towards certain plant pathogens, thereby contributing to the overall health of the plant community in its habitat. Overall, Chryseobacterium rhizoplanae is an important player in the soil biome, influencing both the physical and biological properties of its environment, and supporting the intricate web of life that exists within the rhizosphere.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Chryseobacterium rhizoplanae has shown potential in various industrial applications, particularly in the fields of biotechnology, waste management, and pharmaceutical development. This organism is known for its ability to thrive in diverse environments, which makes it a candidate for several biotechnological processes. In biotechnology, Chryseobacterium rhizoplanae can be utilized in fermentation processes to produce valuable metabolites. Its enzymatic capabilities allow it to break down complex organic materials, which can be harnessed for the production of bioactive compounds. In the realm of waste management, this microorganism has demonstrated effective biodegradation properties, particularly in the breakdown of pollutants and organic waste. Its ability to degrade various substrates can be applied in the treatment of contaminated soils and wastewater, contributing to environmental remediation efforts. Furthermore, in pharmaceutical development, Chryseobacterium rhizoplanae has been studied for its potential to produce novel bioactive compounds that may serve as leads for new drug development. The organism's unique metabolic pathways can be explored for the synthesis of pharmaceuticals, particularly those targeting microbial infections. Overall, the versatility of Chryseobacterium rhizoplanae in these industrial sectors highlights its significance as a valuable microorganism in modern biotechnology and environmental applications.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	google/gemini-flash-1.5	anthropic/claude-3.5-sonnet	google/gemini-pro	google/gemma-7b-it	meta-llama/llama-3-70b-instruct:nitro	google/palm-2-chat-bison-32k	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	openai/gpt-4	openai/gpt-4	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	anthropic/claude-3-haiku:beta	anthropic/claude-3-haiku:beta
Motility	FALSE	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	N/A	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	aerotolerant ✗	aerotolerant ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	false	false	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	true	true	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	true	true	true	false	false	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true
Host association	N/A	false	false	true	false	false	false	true	false	false	false	false	false	true	true	false	false	false	false	false	false	true	true	true	true	false	false	false	false
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗	bacillus ✓	bacillus ✓

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