Gordonia sihwensis

General Information

Gordonia sihwensis is a fascinating microorganism belonging to the genus Gordonia, which is known for its diverse metabolic capabilities and environmental resilience. One of the most intriguing aspects of G. sihwensis is its ability to degrade a wide range of complex organic compounds, including pollutants such as polycyclic aromatic hydrocarbons (PAHs) and various xenobiotics. This makes it a valuable candidate for bioremediation efforts aimed at cleaning up contaminated environments. Another notable feature of G. sihwensis is its production of biosurfactants, which are surface-active substances that can reduce surface and interfacial tension. These biosurfactants have potential applications in industries such as oil recovery, pharmaceuticals, and cosmetics due to their biodegradability and low toxicity compared to synthetic surfactants. From a research perspective, G. sihwensis is also interesting due to its complex cell wall structure, which contains mycolic acids. These long-chain fatty acids contribute to the organism's resistance to desiccation and chemical damage, enhancing its survival in harsh environments. In summary, Gordonia sihwensis stands out for its bioremediation potential, biosurfactant production, and resilience in extreme conditions, making it a valuable subject of study in environmental microbiology and industrial applications.

Gordonia sihwensis is a fascinating actinobacterial species that has garnered attention due to its unique metabolic capabilities and ecological significance. This microorganism is particularly notable for its ability to degrade a variety of complex organic compounds, including aromatic hydrocarbons, which positions it as a potential candidate for bioremediation applications. The capacity to metabolize such compounds makes Gordonia sihwensis valuable in environmental microbiology, especially in the context of pollution management. One of the most interesting aspects of Gordonia sihwensis is its production of extracellular enzymes that facilitate the breakdown of recalcitrant substances. This enzymatic activity not only contributes to its survival in diverse environments but also highlights its role in nutrient cycling within ecosystems. The study of these enzymes can provide insights into biotechnological applications, such as the development of novel biocatalysts for industrial processes. Additionally, Gordonia sihwensis has been isolated from various environments, including soil and wastewater, indicating its adaptability and resilience. This adaptability is a key characteristic that makes it a subject of interest for researchers exploring microbial diversity and environmental adaptation strategies. Understanding the genetic and metabolic pathways of Gordonia sihwensis can lead to advancements in synthetic biology and environmental engineering. In summary, Gordonia sihwensis stands out due to its unique metabolic properties, potential for bioremediation, and the production of valuable enzymes, making it a significant organism for both ecological studies and biotechnological innovations.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Mycobacteriales

Family: Gordoniaceae

Genus: Gordonia

Species: Gordonia sihwensis

NCBI ID

173559

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/029/632/925/GCF_029632925.1_ASM2963292v1

File for sequence-based predictions:
GCF_029632925.1_ASM2963292v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Gordonia sihwensis is a member of the genus Gordonia, which is known for its environmental resilience and ability to degrade various organic compounds. While Gordonia sihwensis is primarily recognized for its role in bioremediation, it has also been associated with human health implications. Clinical relevance arises from its potential to cause infections, particularly in immunocompromised individuals. Reports have indicated that this organism can be isolated from clinical specimens, suggesting its role as an opportunistic pathogen. Pathogenicity is often linked to its ability to evade the immune response, which may involve biofilm formation and resistance to phagocytosis. Furthermore, there are concerns regarding antimicrobial resistance, as some strains of Gordonia species have shown resistance to multiple antibiotics, complicating treatment options for infections. Although Gordonia sihwensis is not commonly associated with outbreaks, its presence in clinical settings underscores the importance of monitoring for this organism, especially in patients with underlying health conditions. Overall, while the primary focus of Gordonia sihwensis has been on its environmental applications, its potential impact on human health cannot be overlooked.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Gordonia sihwensis is a species of actinobacteria that is primarily associated with soil environments and wastewater treatment systems. This microorganism thrives in aerobic conditions, often found in environments rich in organic matter, such as compost heaps and activated sludge from sewage treatment plants. Its ability to degrade complex organic compounds, particularly xenobiotics and polycyclic aromatic hydrocarbons (PAHs), makes it a crucial player in bioremediation processes, helping to detoxify contaminated environments. In terms of ecological interactions, Gordonia sihwensis exhibits symbiotic relationships with other microorganisms, contributing to the overall health of the microbial community. It can also engage in competitive interactions with other bacteria, influencing the microbial dynamics in its habitat. The organism's metabolic versatility allows it to adapt to varying environmental conditions, making it resilient in polluted soils and industrial effluents. Overall, Gordonia sihwensis plays a significant role in maintaining the ecological balance within its biomes, particularly in bioremediation efforts, where it aids in the breakdown of harmful pollutants, thus promoting a healthier ecosystem.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Gordonia sihwensis has shown significant potential in various industrial applications, particularly in the fields of biotechnology, waste management, and bioremediation. This organism is known for its ability to degrade a wide range of environmental pollutants, making it a valuable asset in waste treatment processes. Its enzymatic capabilities allow it to break down complex hydrocarbons, which is particularly useful in the remediation of oil spills and other hydrocarbon-contaminated sites. In the realm of biofuel production, Gordonia sihwensis can be utilized in fermentation processes to convert organic waste into biofuels. The organism's metabolic pathways enable it to efficiently process lignocellulosic biomass, leading to the production of bioethanol and other renewable energy sources. Furthermore, Gordonia sihwensis has been explored for its potential in pharmaceutical development. Its unique metabolic products may serve as precursors for the synthesis of novel compounds with therapeutic properties. The organism's ability to produce specific enzymes can also be harnessed for the development of biocatalysts in various chemical reactions. Overall, the diverse capabilities of Gordonia sihwensis in biodegradation, enzyme production, and bioconversion highlight its importance in advancing sustainable industrial practices and addressing environmental challenges.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	google/gemini-flash-1.5	meta-llama/llama-3-70b-instruct:nitro	google/palm-2-chat-bison-32k	google/gemini-pro	google/gemma-7b-it	mistralai/mistral-7b-instruct	mistralai/mixtral-8x7b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	openchat/openchat-7b	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	anthropic/claude-3-haiku:beta	anthropic/claude-3-haiku:beta
Motility	FALSE	false ✓	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerotolerant ✗	aerotolerant ✗	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true
Animal pathogenicity	FALSE	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	true	true	true	true	true	true	true	true	false	false	false	false	false	false	true	true	false	false	false	false	false	false	false	false	false	false	true	true
Host association	N/A	true	true	false	true	false	true	true	true	false	false	false	false	false	false	true	true	false	false	false	false	false	false	true	true	true	true	true	true
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗	coccus ✗	coccus ✗	bacillus ✓	bacillus ✓

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