Niallia oryzisoli

General Information

Niallia oryzisoli is a bacterium that has garnered attention due to its unique ecological niche and potential applications in agriculture. This microorganism was originally isolated from rice paddy soil, which suggests it plays a role in the complex microbial ecosystem associated with rice cultivation. One of the most intriguing aspects of Niallia oryzisoli is its potential for promoting plant growth and health. Research has indicated that Niallia oryzisoli may be involved in nutrient cycling within the soil, particularly in the breakdown of organic matter, which can enhance soil fertility. This makes it a candidate for use in sustainable agriculture practices, where it could help reduce the need for chemical fertilizers. Additionally, Niallia oryzisoli has shown promise in biocontrol, as it may produce substances that inhibit the growth of plant pathogens. This biocontrol potential is particularly valuable in the context of integrated pest management strategies, aiming to reduce the reliance on chemical pesticides. From a research perspective, Niallia oryzisoli is also interesting due to its genetic and metabolic capabilities. Studies on its genome have revealed genes that are involved in the production of secondary metabolites, which could have various applications in biotechnology. Understanding these genetic pathways could lead to the discovery of new natural products with pharmaceutical or industrial applications. In summary, Niallia oryzisoli is a bacterium with significant potential in agriculture and biotechnology, making it a valuable subject for further research. Its role in nutrient cycling, plant growth promotion, and biocontrol, along with its genetic potential for secondary metabolite production, underscores its importance in both ecological and applied microbiology.

Niallia oryzisoli is a fascinating bacterium that was first isolated from rice paddy soil, highlighting its ecological niche and potential agricultural significance. This organism is particularly interesting due to its ability to thrive in environments rich in organic matter, which suggests a role in nutrient cycling within rice ecosystems. Its metabolic versatility allows it to degrade various organic compounds, making it a valuable candidate for bioremediation efforts in agricultural settings. One of the unique aspects of Niallia oryzisoli is its production of extracellular enzymes, which can break down complex polysaccharides. This characteristic not only aids in its survival in nutrient-poor conditions but also positions it as a potential tool in industrial applications, such as the production of biofuels and bioplastics. Furthermore, studies have indicated that Niallia oryzisoli may possess antimicrobial properties, which could be harnessed in the development of natural pesticides or as a means to combat plant pathogens. This dual role in both promoting plant health and contributing to soil health underscores its importance in sustainable agriculture. Overall, Niallia oryzisoli stands out as a microbe of interest for researchers focused on environmental microbiology, agricultural sustainability, and biotechnological applications, making it a promising subject for further study.

Taxonomy

Superkingdom: Bacteria

Phylum: Bacillota

Class: Bacilli

Order: Bacillales

Family: Bacillaceae

Genus: Niallia

Species: Niallia oryzisoli

NCBI ID

1737571

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/036/670/025/GCF_036670025.1_ASM3667002v1

File for sequence-based predictions:
GCF_036670025.1_ASM3667002v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Niallia oryzisoli is a Gram-negative bacterium that has been primarily isolated from rice paddy soil. While its direct clinical implications in human health are not extensively documented, it is important to consider its potential role in the environment and its interactions with other microorganisms. Niallia oryzisoli may contribute to soil health and nutrient cycling, which indirectly supports agricultural practices and food security. However, its presence in agricultural settings raises concerns about pathogenicity and antimicrobial resistance due to the potential for horizontal gene transfer among soil bacteria. Research into the antimicrobial properties of soil bacteria, including Niallia oryzisoli, may reveal novel compounds that could be developed into therapeutics. Furthermore, understanding the ecological role of Niallia oryzisoli could provide insights into its interactions with plant roots and other soil microorganisms, which may have implications for plant health and disease resistance. Overall, while Niallia oryzisoli is not currently associated with specific human diseases, its environmental significance and potential for antimicrobial resistance warrant further investigation.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Niallia oryzisoli is a microorganism primarily associated with rice paddy fields and other agricultural ecosystems. This organism thrives in environments characterized by high moisture levels and nutrient-rich soils, which are typical of flooded rice cultivation. The presence of Niallia oryzisoli in these biomes plays a significant role in the nitrogen cycle, as it is known to contribute to the biological fixation of nitrogen, enhancing soil fertility and promoting plant growth. In addition to its role in nutrient cycling, Niallia oryzisoli exhibits notable interactions with other microorganisms in the soil, forming symbiotic relationships that can improve the overall health of the ecosystem. These interactions can lead to increased microbial diversity, which is essential for maintaining the resilience of the agricultural biome. Furthermore, Niallia oryzisoli has shown adaptability to varying environmental conditions, including fluctuations in water levels and soil composition. This adaptability allows it to thrive in both aerobic and anaerobic conditions, making it a versatile inhabitant of its preferred habitats. Its presence is often linked to improved soil structure and enhanced organic matter decomposition, which are critical for sustaining the productivity of rice paddies and similar agricultural environments.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Niallia oryzisoli has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where Niallia oryzisoli is utilized for its unique metabolic capabilities. This organism is known to participate in fermentation processes, which can be harnessed for the production of bioactive compounds, including organic acids and alcohols, that are valuable in food and beverage industries. In the realm of waste management, Niallia oryzisoli has demonstrated effective biodegradation abilities, particularly in the breakdown of complex organic materials. This makes it a candidate for use in bioremediation efforts, where it can help in the detoxification of contaminated environments, such as soil and water, by degrading pollutants. Furthermore, Niallia oryzisoli has potential applications in biofuel production. Its metabolic pathways can be exploited to convert biomass into biofuels through fermentation processes, contributing to sustainable energy solutions. The efficiency of this organism in converting agricultural waste into usable energy forms is particularly noteworthy. In pharmaceutical development, the enzymatic activities of Niallia oryzisoli can be harnessed for the production of enzymes that are crucial in various biochemical reactions. These enzymes can be used in drug formulation and development, enhancing the efficacy of pharmaceutical products. Overall, Niallia oryzisoli presents a versatile profile with applications spanning biotechnology, waste management, biofuel production, and pharmaceutical development, making it a valuable organism in industrial microbiology.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	google/gemini-pro	google/gemma-7b-it	mistralai/mistral-7b-instruct	meta-llama/llama-3-70b-instruct:nitro	google/palm-2-chat-bison-32k	mistralai/mixtral-8x7b-instruct:nitro	openchat/openchat-7b	anthropic/claude-3.5-sonnet	anthropic/claude-3-haiku:beta	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/gemini-pro-1.5	google/gemini-pro-1.5	google/gemini-flash-1.5	google/gemini-flash-1.5	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	openai/gpt-4	openai/gpt-4	openai/gpt-4o	openai/gpt-4o	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	TRUE	false ✗	true ✓	false ✗	true ✓	false ✗	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗
Gram staining	gram stain positive	gram stain negative ✗	gram stain negative ✗	gram stain variable ✗	gram stain negative ✗	gram stain negative ✗	gram stain positive ✓	gram stain negative ✗	gram stain negative ✗	gram stain negative ✗	N/A	gram stain negative ✗	N/A	gram stain negative ✗	N/A	gram stain negative ✗	N/A	gram stain negative ✗	N/A	gram stain negative ✗	N/A	gram stain positive ✓	N/A	gram stain negative ✗	N/A	gram stain positive ✓	N/A	gram stain variable ✗
Aerophilicity	aerobic	anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	aerotolerant ✗	aerotolerant ✗	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	false	true	false	true	true	true	false	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	true	true	false	true	true	false	false	false	false	true	true	true	true	true	true	true	true	true	true	true	true	false	false
Host association	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Plant pathogenicity	FALSE	true ✗	false ✓	true ✗	true ✗	true ✗	false ✓	true ✗	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Spore formation	TRUE	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗
Hemolysis	N/A	N/A	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗

Back to Search