Mycolicibacterium gilvum

General Information

Mycolicibacterium gilvum is a fascinating microorganism that belongs to the family Mycobacteriaceae. This bacterium is particularly interesting due to its ability to degrade a wide range of environmental pollutants, making it a valuable candidate for bioremediation efforts. One of the most notable features of M. gilvum is its capacity to break down polycyclic aromatic hydrocarbons (PAHs), which are persistent organic pollutants commonly found in contaminated soils and water bodies. The metabolic versatility of M. gilvum is attributed to its extensive repertoire of catabolic enzymes, which enable it to utilize various complex organic compounds as carbon and energy sources. This characteristic not only underscores its ecological importance but also highlights its potential application in environmental biotechnology. Another intriguing aspect of M. gilvum is its genomic adaptability. The genome of M. gilvum has been sequenced, revealing a wealth of genetic information that provides insights into its metabolic pathways and regulatory mechanisms. This genomic data is invaluable for researchers aiming to engineer strains with enhanced biodegradation capabilities or to understand the evolutionary adaptations that allow this bacterium to thrive in diverse environments. In addition to its environmental applications, M. gilvum is also of interest in the field of microbial ecology. Its interactions with other microorganisms and its role in microbial communities are areas of active research. Understanding these interactions can shed light on the complex dynamics of microbial ecosystems and the factors that influence microbial diversity and function. Overall, Mycolicibacterium gilvum stands out as a promising agent for bioremediation and a model organism for studying microbial degradation of pollutants. Its unique characteristics and potential applications make it a subject of significant scientific interest.

Mycolicibacterium gilvum is a fascinating species within the genus Mycolicibacterium, which is known for its unique lipid composition and ecological versatility. This organism is particularly interesting due to its ability to thrive in diverse environments, including soil and aquatic ecosystems, showcasing its adaptability and resilience. One of the standout features of M. gilvum is its production of mycolic acids, which are long-chain fatty acids that contribute to the organism's cell wall structure, providing protection against environmental stressors and antibiotics. This characteristic makes it a valuable subject for research in microbial physiology and antibiotic resistance mechanisms. Furthermore, M. gilvum has been studied for its potential applications in bioremediation, as it can degrade various environmental pollutants. Its metabolic pathways are of significant interest, particularly in the context of understanding how it metabolizes complex organic compounds. The organism's ability to utilize a wide range of substrates for growth positions it as a potential candidate for biotechnological applications, including the development of sustainable waste management strategies. In addition, M. gilvum has been explored for its interactions with other microorganisms, contributing to our understanding of microbial communities and their dynamics in natural habitats. This aspect of its biology is crucial for ecological studies and can provide insights into the roles of microorganisms in nutrient cycling and ecosystem functioning. Overall, Mycolicibacterium gilvum stands out as a unique and valuable organism for research in microbiology, ecology, and biotechnology.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Mycobacteriales

Family: Mycobacteriaceae

Genus: Mycolicibacterium

Species: Mycolicibacterium gilvum

NCBI ID

1804

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/025/821/885/GCF_025821885.1_ASM2582188v1

File for sequence-based predictions:
GCF_025821885.1_ASM2582188v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Mycolicibacterium gilvum is a member of the genus Mycolicibacterium, which is known for its complex lipid composition and unique cell wall structure. This microorganism has been studied for its potential role in human health and disease. While M. gilvum is not typically associated with human infections, it is important to note its relevance in the context of environmental microbiology and its potential interactions with human pathogens. Clinical implications of M. gilvum include its potential use in bioremediation and its role in the microbiome, where it may contribute to the overall health of the host. Its ability to degrade complex organic compounds suggests a possible application in waste management and environmental cleanup. However, the organism's pathogenicity is not well-documented, and it is not considered a primary pathogen in humans. There is limited information regarding its antimicrobial resistance mechanisms, but like many mycobacteria, it may possess intrinsic resistance to certain antibiotics due to its unique cell wall structure. In summary, while Mycolicibacterium gilvum does not have a well-established role in human disease, its environmental significance and potential applications in biotechnology warrant further investigation. Its interactions with other microorganisms and the human microbiome could provide insights into its clinical relevance in the future.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Mycolicibacterium gilvum is a species of actinobacteria that is primarily associated with a variety of terrestrial environments and soil ecosystems. This microorganism thrives in nutrient-rich soils, particularly those that are rich in organic matter, where it plays a crucial role in the decomposition of organic materials. Its ability to degrade complex organic compounds makes it an important player in nutrient cycling within these ecosystems. Soil Biomes: In soil biomes, Mycolicibacterium gilvum contributes to the breakdown of plant litter and other organic debris, facilitating the release of nutrients back into the soil. This process not only enriches the soil but also supports the growth of other microorganisms and plants, thereby enhancing overall soil health and fertility. The presence of this bacterium can indicate a healthy soil ecosystem, as it is often found in association with other beneficial microbes. Symbiotic Relationships: Mycolicibacterium gilvum may also engage in symbiotic relationships with various plants, aiding in their growth by enhancing nutrient availability. This interaction can be particularly beneficial in agricultural settings, where the bacterium's presence can improve crop yields and soil quality. Environmental Adaptations: This microorganism exhibits remarkable environmental adaptability, allowing it to thrive in varying conditions, including those with fluctuating moisture levels and temperatures. Its resilience contributes to its widespread distribution in different soil types, from temperate forests to grasslands. In summary, Mycolicibacterium gilvum is a vital component of soil ecosystems, playing significant roles in organic matter decomposition, nutrient cycling, and potential symbiotic interactions with plants, thereby supporting the health and sustainability of its habitats.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Mycolicibacterium gilvum has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where Mycolicibacterium gilvum is utilized for its ability to produce specific enzymes that can be harnessed in biocatalysis processes. These enzymes can facilitate chemical reactions in a more environmentally friendly manner compared to traditional chemical methods. In the realm of waste management, Mycolicibacterium gilvum has demonstrated capabilities in biodegradation, particularly in the breakdown of complex organic compounds. This property is particularly valuable in the treatment of contaminated environments, where the organism can help in the remediation of pollutants, including hydrocarbons and other toxic substances. Furthermore, the organism has potential applications in biofuel production. Its metabolic pathways can be exploited to convert biomass into biofuels through fermentation processes, contributing to sustainable energy solutions. The efficiency of Mycolicibacterium gilvum in utilizing various substrates makes it a candidate for enhancing biofuel yield. In pharmaceutical development, the unique metabolic products of Mycolicibacterium gilvum may lead to the discovery of novel compounds with therapeutic properties. Research into its secondary metabolites could unveil new drugs or lead to the development of antibiotics, given the organism's unique biochemical pathways. Overall, Mycolicibacterium gilvum represents a versatile microorganism with promising applications across multiple industries, particularly in biotechnology, waste management, biofuel production, and pharmaceutical development.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	meta-llama/llama-3-70b-instruct:nitro	google/gemini-flash-1.5	google/palm-2-chat-bison-32k	google/gemma-7b-it	mistralai/mistral-7b-instruct	mistralai/mixtral-8x7b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	openchat/openchat-7b	anthropic/claude-3-haiku:beta	google/gemini-pro	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	FALSE	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain negative ✗	gram stain variable ✗	gram stain negative ✗	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain variable ✗
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A
Extreme environment tolerance	N/A	false	false	false	true	true	false	true	false	true	false	false	false	false	false	false	false	false	true	true	true	true	true	true	true	true	true	true
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	TRUE	true ✓	true ✓	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗
Biosafety level	biosafety level 1	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	false	true	true	false	true	true	true	false	false	false	false	true	true	false	false	true	true	false	false	true	true	true	true
Host association	TRUE	true ✓	true ✓	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	spirillum ✗	spirillum ✗

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