Vibrio japonicus

General Information

Vibrio japonicus is a fascinating marine bacterium that has garnered attention due to its unique ecological roles and potential applications in biotechnology. This organism is part of the Vibrio genus, which includes several species known for their interactions with marine life and their roles in nutrient cycling in aquatic environments. One of the most interesting aspects of Vibrio japonicus is its ability to degrade complex polysaccharides, such as chitin and alginate, which are abundant in marine ecosystems. This capability makes it a key player in the decomposition of organic matter, contributing to the recycling of nutrients in the ocean. The enzymes produced by Vibrio japonicus for polysaccharide degradation are of significant interest for industrial applications, particularly in the production of biofuels and bioplastics. Additionally, Vibrio japonicus has been studied for its symbiotic relationships with marine organisms. It can form beneficial associations with various marine invertebrates, aiding in their digestion processes and providing them with essential nutrients. This symbiotic behavior highlights the ecological importance of Vibrio japonicus in maintaining the health and balance of marine ecosystems. From a research perspective, the genetic and metabolic pathways of Vibrio japonicus are valuable for understanding microbial ecology and evolution. Its genome has been sequenced, revealing a wealth of information about its metabolic capabilities and potential for biotechnological exploitation. Researchers are particularly interested in the regulatory mechanisms that control its polysaccharide-degrading enzymes, as these could be harnessed for developing new biotechnological processes. In summary, Vibrio japonicus is a remarkable marine bacterium with significant ecological roles and promising applications in biotechnology. Its ability to degrade complex polysaccharides and form symbiotic relationships with marine organisms makes it a valuable subject of study for both environmental and industrial research.

Vibrio japonicus is a fascinating marine bacterium that thrives in coastal waters, particularly in the Pacific region. This organism is notable for its ability to adapt to varying salinity levels, which allows it to inhabit diverse marine environments. One of the most interesting aspects of Vibrio japonicus is its role in the marine ecosystem, where it contributes to the degradation of organic matter and plays a part in nutrient cycling. This makes it a valuable organism for studies related to marine ecology and biogeochemical processes. Additionally, Vibrio japonicus has garnered attention in the field of aquaculture due to its association with various marine organisms, including fish and shellfish. It has been studied for its potential pathogenicity, which raises important questions about the health of marine species and the implications for aquaculture practices. Understanding the interactions between Vibrio japonicus and its hosts can provide insights into disease management in aquaculture settings. Furthermore, this bacterium is of interest in biotechnology, particularly in the production of enzymes and bioactive compounds. Researchers are exploring its metabolic pathways to harness its capabilities for industrial applications. The potential for Vibrio japonicus to produce valuable bioproducts makes it a target for biotechnological innovations. Overall, Vibrio japonicus stands out as a significant organism for research in marine biology, ecology, aquaculture, and biotechnology.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Vibrionales

Family: Vibrionaceae

Genus: Vibrio

Species: Vibrio japonicus

NCBI ID

1824638

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/582/835/GCF_024582835.1_ASM2458283v1

File for sequence-based predictions:
GCF_024582835.1_ASM2458283v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The bacterium Vibrio japonicus is a marine organism that has gained attention due to its potential clinical implications in human health. It is primarily associated with gastrointestinal infections, particularly in individuals who consume raw or undercooked seafood. The organism can cause vibriosis, which is characterized by symptoms such as diarrhea, abdominal cramps, nausea, vomiting, and fever. In severe cases, especially in immunocompromised individuals, it can lead to septicemia, a life-threatening condition requiring prompt medical intervention. One of the notable aspects of Vibrio japonicus is its pathogenicity linked to its ability to produce various virulence factors, including adhesins and toxins that facilitate colonization and invasion of the host's gastrointestinal tract. The organism's immune evasion strategies include the production of polysaccharide capsules that help it resist phagocytosis by immune cells. In terms of antimicrobial resistance, there have been reports of Vibrio japonicus exhibiting resistance to multiple antibiotics, which complicates treatment options for infected patients. This resistance is often attributed to the acquisition of resistance genes through horizontal gene transfer, making it crucial for healthcare providers to be aware of local resistance patterns when treating infections. While Vibrio japonicus is primarily recognized for its pathogenic potential, it also has potential applications in biotechnology and aquaculture. Research is ongoing to explore its role in probiotics and its potential benefits in promoting gut health, although this area requires further investigation to establish safety and efficacy. Overall, Vibrio japonicus serves as a reminder of the complex interactions between marine environments and human health, highlighting the need for continued surveillance and research to understand its full clinical relevance.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Vibrio japonicus is a marine bacterium commonly found in coastal waters and estuarine environments. This organism thrives in areas with high salinity and is often associated with brackish water habitats, where freshwater meets saltwater. Its presence is particularly noted in regions with abundant organic matter, such as mangroves and salt marshes, where it plays a crucial role in nutrient cycling and organic matter decomposition. In these marine ecosystems, Vibrio japonicus interacts with various organisms, including fish and invertebrates, often forming symbiotic relationships. For instance, it can be found in the gut of certain marine animals, aiding in digestion and nutrient absorption. This bacterium is also known to be involved in the biodegradation of pollutants, contributing to the overall health of its environment. Furthermore, Vibrio japonicus exhibits remarkable environmental adaptability, allowing it to survive in fluctuating salinity and temperature conditions. This adaptability not only enhances its survival but also influences the microbial community structure in its habitats, making it a key player in the microbial food web. Overall, Vibrio japonicus is an important microorganism in marine biomes, contributing to ecological balance and serving as a bioindicator of environmental health.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Vibrio japonicus has shown significant potential in various industrial applications. One of the primary areas is in biotechnology, where Vibrio japonicus is utilized for its ability to produce enzymes that can be harnessed in biocatalysis processes. These enzymes are valuable in the synthesis of pharmaceuticals and other chemical compounds, enhancing the efficiency and specificity of reactions. In the realm of waste management, Vibrio japonicus has demonstrated capabilities in biodegradation of pollutants, particularly in marine environments. This organism can break down complex organic materials, making it useful for treating wastewater and reducing environmental contaminants. Moreover, Vibrio japonicus is being explored for its role in biofuel production. Its metabolic pathways can be leveraged in fermentation processes to convert organic substrates into biofuels, such as ethanol or biodiesel, contributing to sustainable energy solutions. In pharmaceutical development, the unique biochemical properties of Vibrio japonicus are being studied for the production of bioactive compounds that may have therapeutic effects. This includes the potential for developing new antibiotics or other medicinal agents derived from its metabolic products. Overall, Vibrio japonicus represents a versatile microorganism with promising applications across multiple industries, particularly in enzyme production, biodegradation, and fermentation processes.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	google/gemini-pro	mistralai/mixtral-8x7b-instruct:nitro	openai/gpt-4o	openai/gpt-4o	anthropic/claude-3.5-sonnet	anthropic/claude-3-haiku:beta	mistralai/mistral-7b-instruct	meta-llama/llama-3-8b-instruct:nitro	openchat/openchat-7b	google/gemma-7b-it	google/gemma-7b-it	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	google/gemini-flash-1.5	google/gemini-flash-1.5	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4	openai/gpt-4	google/gemini-pro-1.5	google/gemini-pro-1.5	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	TRUE	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗
Biosafety level	biosafety level 1	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	true	true	false	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true	false	false
Host association	FALSE	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	gamma	N/A	beta	beta	beta	beta	N/A	N/A	N/A	alpha	alpha	beta	beta	beta	beta	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	spirillum ✗	spirillum ✗

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