Vibrio aphrogenes

General Information

Vibrio aphrogenes is a fascinating microorganism belonging to the genus Vibrio, which is well-known for its diverse and often ecologically significant species. One of the most intriguing aspects of Vibrio aphrogenes is its bioluminescent properties. This characteristic makes it a subject of interest in marine biology and ecological studies, as bioluminescence plays a crucial role in marine ecosystems, including predator-prey interactions and communication among marine organisms. Another notable feature of Vibrio aphrogenes is its ability to thrive in marine environments, particularly in coastal and estuarine waters. This adaptability to various saline conditions makes it an important organism for studying environmental resilience and adaptation mechanisms in marine bacteria. From a biotechnological perspective, Vibrio aphrogenes holds potential due to its production of unique secondary metabolites. These compounds can have various applications, including antimicrobial properties, which are valuable in the development of new antibiotics and other pharmaceuticals. The study of these metabolites can also provide insights into the metabolic pathways and genetic regulation in marine bacteria. In summary, Vibrio aphrogenes is a microorganism of significant interest due to its bioluminescence, environmental adaptability, and biotechnological potential. Its unique characteristics make it a valuable subject for research in marine biology, ecology, and biotechnology.

Vibrio aphrogenes is a fascinating marine bacterium that has garnered attention due to its unique ecological role and potential applications in biotechnology. This organism is primarily found in coastal waters and is known for its ability to thrive in a variety of saline environments, making it an important player in marine ecosystems. One of the most interesting aspects of Vibrio aphrogenes is its capacity for bioluminescence, a trait that is not only visually striking but also serves ecological functions such as attracting prey and deterring predators. Additionally, Vibrio aphrogenes has been studied for its potential in bioremediation processes, particularly in the degradation of pollutants in marine environments. Its metabolic versatility allows it to utilize a range of organic compounds, which can be harnessed for environmental cleanup efforts. The organism's enzymatic capabilities are of particular interest, as they may lead to the discovery of novel enzymes with industrial applications, including in the food and pharmaceutical industries. Furthermore, research into Vibrio aphrogenes contributes to our understanding of microbial interactions in marine ecosystems, particularly in relation to nutrient cycling and the dynamics of microbial communities. This makes it a valuable organism for studies in marine microbiology and ecology, providing insights that could inform conservation efforts and sustainable practices in marine resource management.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Vibrionales

Family: Vibrionaceae

Genus: Vibrio

Species: Vibrio aphrogenes

NCBI ID

1891186

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/157/735/GCF_002157735.2_ASM215773v2

File for sequence-based predictions:
GCF_002157735.2_ASM215773v2_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Vibrio aphrogenes is a marine bacterium that has been associated with various clinical implications, particularly in the context of infections and pathogenicity. While it is not as widely recognized as other members of the Vibrio genus, such as Vibrio cholerae, it has been implicated in gastrointestinal infections and wound infections, especially in individuals with compromised immune systems or those exposed to contaminated water. Clinical relevance arises from its potential to cause diarrheal diseases and soft tissue infections, particularly in coastal regions where the organism is prevalent. Furthermore, Vibrio aphrogenes exhibits certain antimicrobial resistance mechanisms, which can complicate treatment options for infections. Resistance to commonly used antibiotics has been documented, necessitating the need for careful selection of therapeutic agents. In terms of immune evasion strategies, Vibrio aphrogenes may utilize various mechanisms to evade host defenses, including the production of biofilms and the secretion of virulence factors that inhibit the immune response. While research on Vibrio aphrogenes is still emerging, its role in outbreaks and infections highlights the importance of monitoring this organism in clinical settings, particularly in relation to public health and safety in marine environments.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Vibrio aphrogenes is a marine bacterium commonly found in coastal waters and estuarine environments. This microorganism thrives in brackish waters, where the salinity levels fluctuate, allowing it to adapt to varying conditions. Its presence is often associated with sediment-rich areas where organic matter is abundant, providing a nutrient source for its growth. In these marine biomes, Vibrio aphrogenes plays a crucial role in the decomposition of organic materials, contributing to nutrient cycling within the ecosystem. It is known to engage in symbiotic relationships with various marine organisms, including fish and invertebrates, where it can aid in digestion or provide protection against pathogens. Additionally, this bacterium is often found in association with mangrove forests and salt marshes, where it contributes to the overall health of these ecosystems by breaking down detritus and recycling nutrients. Its ability to thrive in hypersaline environments also highlights its ecological adaptability, allowing it to survive in conditions that may be inhospitable to other microorganisms. Overall, Vibrio aphrogenes is an integral component of its marine habitat, influencing both the biological and chemical processes that sustain the health of coastal ecosystems.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Vibrio aphrogenes has shown potential in various industrial applications, particularly in the fields of biotechnology, waste management, and pharmaceutical development. This organism is known for its ability to thrive in marine environments, which can be harnessed for several beneficial processes. In biotechnology, Vibrio aphrogenes can be utilized in fermentation processes to produce valuable metabolites. These metabolites can include enzymes that are useful in various industrial applications, such as food processing and bioremediation. In the realm of waste management, Vibrio aphrogenes has demonstrated capabilities in biodegradation, particularly in the breakdown of organic pollutants in marine environments. This property can be leveraged to develop effective strategies for treating wastewater and reducing environmental contamination. Furthermore, in pharmaceutical development, the unique biochemical pathways of Vibrio aphrogenes may lead to the discovery of novel compounds with antimicrobial properties. This could open avenues for the development of new antibiotics or other therapeutic agents. Overall, the diverse metabolic capabilities of Vibrio aphrogenes position it as a valuable organism in the pursuit of sustainable industrial practices and innovative solutions across multiple sectors.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	openai/gpt-4o	anthropic/claude-3.5-sonnet	google/gemini-pro	mistralai/mixtral-8x7b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	google/gemini-pro-1.5	mistralai/mistral-7b-instruct	perplexity/llama-3-sonar-small-32k-chat	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	google/gemini-flash-1.5	google/gemini-flash-1.5	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openai/gpt-4	openai/gpt-4	anthropic/claude-3-haiku:beta	anthropic/claude-3-haiku:beta	google/gemma-7b-it	google/gemma-7b-it	openchat/openchat-7b	openchat/openchat-7b	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	N/A	facultatively anaerobic	facultatively anaerobic	N/A	facultatively anaerobic	N/A	facultatively anaerobic	N/A	N/A	N/A	N/A	N/A	N/A	facultatively anaerobic	facultatively anaerobic	N/A	N/A	facultatively anaerobic	facultatively anaerobic	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false
Animal pathogenicity	N/A	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	false	false
Biosafety level	biosafety level 1	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true
Host association	FALSE	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	beta	beta	gamma	N/A	beta	N/A	N/A	N/A	beta	beta	beta	beta	N/A	N/A	beta	beta	N/A	N/A	beta	beta	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	spirillum ✗	spirillum ✗

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