Dyella solisilvae

General Information

Dyella solisilvae is a fascinating microorganism that belongs to the genus Dyella. This bacterium was first isolated from forest soil, which hints at its potential role in soil ecosystems and nutrient cycling. One of the most intriguing aspects of Dyella solisilvae is its ability to thrive in diverse environmental conditions, which makes it a subject of interest for studies on microbial ecology and environmental microbiology. Dyella solisilvae is known for its metabolic versatility, which allows it to utilize a wide range of organic compounds. This characteristic is particularly valuable for bioremediation research, as the bacterium could potentially be used to degrade environmental pollutants. Additionally, its ability to produce various enzymes and secondary metabolites opens up possibilities for industrial applications, including the production of bioactive compounds and biocatalysts. Another noteworthy feature of Dyella solisilvae is its genomic adaptability. The genome of this bacterium contains numerous genes associated with stress response and adaptation, which could provide insights into microbial survival strategies in changing environments. This adaptability also makes Dyella solisilvae a promising candidate for genetic and biotechnological studies aimed at enhancing microbial functions for specific applications. In summary, Dyella solisilvae stands out due to its environmental resilience, metabolic diversity, and potential for biotechnological exploitation. These characteristics make it a valuable organism for both fundamental research and practical applications in various fields.

Dyella solisilvae is a fascinating bacterium that was first isolated from a soil sample in a subtropical forest. This organism belongs to the family of Comamonadaceae and is notable for its ability to thrive in diverse environmental conditions, particularly in soil rich in organic matter. One of the most interesting aspects of Dyella solisilvae is its potential for bioremediation, as it has shown capabilities to degrade various pollutants, including aromatic compounds. This makes it a valuable candidate for research in environmental microbiology and biotechnology, particularly in efforts to clean up contaminated sites. Additionally, Dyella solisilvae has been studied for its metabolic versatility, which allows it to utilize a wide range of carbon sources. This adaptability not only highlights its ecological significance but also opens avenues for exploring its applications in industrial processes, such as the production of biofuels or bioplastics. The organism's genome has been sequenced, providing insights into its metabolic pathways and genetic adaptations that enable it to survive in challenging environments. Furthermore, Dyella solisilvae contributes to our understanding of microbial diversity and the roles that soil bacteria play in nutrient cycling and ecosystem health. Its unique characteristics and potential applications make it a subject of interest for researchers aiming to harness microbial processes for environmental sustainability and innovation.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Lysobacterales

Family: Rhodanobacteraceae

Genus: Dyella

Species: Dyella solisilvae

NCBI ID

1920168

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/351/225/GCF_003351225.1_ASM335122v1

File for sequence-based predictions:
GCF_003351225.1_ASM335122v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The bacterium Dyella solisilvae is a member of the family Rhizobiaceae and has been isolated from various environmental sources, including soil and plant rhizospheres. While its clinical implications are not as extensively documented as those of more pathogenic organisms, there are several noteworthy aspects regarding its potential role in human health and disease. Firstly, Dyella solisilvae has been studied for its potential as a biocontrol agent in agriculture, which indirectly relates to human health by promoting sustainable farming practices and reducing reliance on chemical pesticides. This can lead to healthier food sources and a decrease in chemical exposure for humans. In terms of pathogenicity, there is limited evidence suggesting that Dyella solisilvae may be associated with opportunistic infections, particularly in immunocompromised individuals. However, specific cases and mechanisms of infection remain under-researched. Moreover, the organism's antimicrobial resistance profile is not well-characterized, but like many environmental bacteria, it may possess genes that confer resistance to certain antibiotics. This raises concerns about the potential for horizontal gene transfer of resistance traits to more pathogenic bacteria, which could complicate treatment options in clinical settings. In summary, while Dyella solisilvae is not currently recognized as a major human pathogen, its environmental presence and potential interactions with human health through biocontrol and antimicrobial resistance warrant further investigation. Understanding its ecological role and interactions with other microorganisms could provide insights into its relevance in both health and disease contexts.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Dyella solisilvae is a bacterium that has been primarily isolated from soil environments, particularly in areas characterized by forest ecosystems. This microorganism thrives in the rhizosphere, the region of soil that is directly influenced by root secretions and associated soil microorganisms. Its presence in this niche highlights its role in promoting plant health and nutrient cycling within the ecosystem. In the forest biome, Dyella solisilvae contributes to the breakdown of organic matter, facilitating the decomposition process and enhancing soil fertility. This bacterium is known for its ability to degrade various organic compounds, which is crucial for nutrient availability to plants. Its interactions with plant roots can lead to symbiotic relationships, where it may assist in nutrient uptake, particularly nitrogen and phosphorus, thereby supporting plant growth. Furthermore, Dyella solisilvae exhibits environmental adaptability, allowing it to thrive in varying soil conditions, including those with different moisture levels and pH values. This adaptability is essential for its survival in the dynamic forest ecosystems, where soil conditions can fluctuate significantly. Overall, Dyella solisilvae plays a vital role in maintaining the health of forest biomes through its contributions to nutrient cycling, organic matter decomposition, and potential symbiotic relationships with plants.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Dyella solisilvae has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where Dyella solisilvae is utilized for its ability to produce enzymes that can be harnessed in biocatalysis processes. These enzymes can facilitate chemical reactions in a more environmentally friendly manner compared to traditional chemical catalysts. In the realm of waste management, Dyella solisilvae has demonstrated capabilities in biodegradation, particularly in the breakdown of complex organic compounds. This makes it a valuable organism for the treatment of contaminated environments, such as soil and water, where it can help in the remediation of pollutants. Furthermore, Dyella solisilvae has been explored for its role in biofuel production. Its metabolic pathways can be leveraged in fermentation processes to convert biomass into bioethanol, providing a renewable energy source that can reduce reliance on fossil fuels. In pharmaceutical development, the unique metabolic properties of Dyella solisilvae may lead to the discovery of novel compounds with therapeutic potential. The organism's ability to produce secondary metabolites could be further investigated for their applications in drug formulation. Overall, Dyella solisilvae represents a versatile microorganism with promising applications across multiple industries, particularly in enzyme production, biodegradation, and biofuel generation.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	meta-llama/llama-3-70b-instruct:nitro	google/gemini-flash-1.5	mistralai/mixtral-8x7b-instruct:nitro	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	google/gemma-7b-it	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	anthropic/claude-3-haiku:beta	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-4o	openai/gpt-4o	google/gemini-pro	google/gemini-pro	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain variable ✗	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	N/A	facultatively anaerobic ✗	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	aerotolerant ✗	aerotolerant ✗	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Biofilm formation	N/A	true	true	true	false	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false
Animal pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	false	false	true	true	false	true	true	false	true	false	false	false	false	false	false	true	true	false	false	true	true	true	true	true	true	false	false
Host association	FALSE	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗

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