Komagataeibacter diospyri

General Information

Komagataeibacter diospyri is a fascinating microorganism primarily known for its ability to produce bacterial cellulose. This cellulose is of high interest due to its unique properties, such as high purity, strength, and biocompatibility, making it valuable for various industrial and medical applications. One of the most intriguing aspects of K. diospyri is its efficiency in synthesizing cellulose even under suboptimal conditions, which makes it a robust candidate for large-scale production. The cellulose produced by this bacterium has a highly crystalline structure, which contributes to its exceptional mechanical properties and thermal stability. Additionally, Komagataeibacter diospyri has been studied for its potential in bioremediation. It can utilize a wide range of carbon sources, including agricultural waste products, which not only makes the production process more sustainable but also helps in waste management. From a research perspective, the genetic and metabolic pathways involved in cellulose production in K. diospyri are of significant interest. Understanding these pathways can lead to genetic modifications that further enhance cellulose yield and quality. Moreover, the bacterium's ability to form biofilms and its interaction with other microbial communities are areas ripe for exploration, offering insights into microbial ecology and potential applications in biotechnology. In summary, Komagataeibacter diospyri stands out due to its remarkable cellulose-producing capabilities, its potential for sustainable production processes, and its promising applications in both industrial and environmental contexts.

Komagataeibacter diospyri is a fascinating species of acetic acid bacteria that has garnered attention for its unique ability to produce cellulose. This characteristic is particularly interesting because cellulose is a crucial biopolymer with numerous applications in various industries, including food, pharmaceuticals, and materials science. The ability of K. diospyri to synthesize cellulose makes it a valuable organism for research into sustainable materials and biotechnological applications. One of the standout features of K. diospyri is its origin; it was isolated from the fruit of the persimmon tree (Diospyros kaki), which not only highlights its ecological niche but also suggests potential interactions with plant systems. This relationship may provide insights into plant-microbe interactions and the role of bacteria in the fermentation processes associated with fruit ripening. Furthermore, K. diospyri is part of a group of bacteria known for their role in vinegar production, which has implications for food science and fermentation technology. The study of this organism can lead to advancements in the production of vinegar and other fermented products, enhancing flavor profiles and improving fermentation efficiency. In summary, Komagataeibacter diospyri stands out due to its cellulose-producing capabilities, its ecological significance as a fruit-associated bacterium, and its potential applications in food technology and sustainable material development. Its unique characteristics make it a subject of interest for researchers exploring the intersections of microbiology, ecology, and biotechnology.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Alphaproteobacteria

Order: Rhodospirillales

Family: Acetobacteraceae

Genus: Komagataeibacter

Species: Komagataeibacter diospyri

NCBI ID

1932662

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/538/185/GCF_006538185.1_ASM653818v1

File for sequence-based predictions:
GCF_006538185.1_ASM653818v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Komagataeibacter diospyri is a notable member of the genus Komagataeibacter, primarily recognized for its role in the production of cellulose and its potential applications in biotechnology. While not traditionally associated with human disease, its clinical relevance is emerging, particularly in the context of biomedical applications and probiotics. Clinical Implications: 1. Biotechnological Applications: Komagataeibacter diospyri is known for its ability to synthesize high-quality cellulose, which has implications in the development of biomaterials and tissue engineering. The cellulose produced can be utilized in wound dressings, drug delivery systems, and as scaffolding in regenerative medicine. 2. Probiotic Potential: There is growing interest in the use of Komagataeibacter diospyri as a potential probiotic organism. Its ability to produce exopolysaccharides may contribute to gut health and modulate the immune response, although more research is needed to fully understand its effects on human health. 3. Pathogenicity and Safety: Currently, Komagataeibacter diospyri is not classified as a human pathogen, and there are no well-documented cases of infections associated with this organism. However, as with any microorganism used in food or health applications, the potential for contamination or adverse reactions must be considered. 4. Antimicrobial Resistance: There is limited information regarding the antimicrobial resistance profile of Komagataeibacter diospyri. As it is not a common pathogen, studies focusing on its resistance mechanisms are scarce. However, understanding its genetic makeup could provide insights into its adaptability and potential interactions with other microbial communities. In summary, while Komagataeibacter diospyri is not directly linked to human disease, its applications in biotechnology and potential as a probiotic highlight its growing importance in the field of microbiology and human health.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Komagataeibacter diospyri is a species of bacteria primarily associated with the tropical and subtropical biomes, particularly in environments where sugar-rich substrates are abundant. This microorganism is commonly found in the fermentation processes of various fruits, especially in the production of vinegar from persimmons, which is a notable ecological niche for this organism. In these environments, K. diospyri plays a crucial role in the fermentation process, converting sugars into acetic acid, which not only contributes to the preservation of the fruit but also enhances its flavor profile. This process is vital for the local food systems and cultural practices surrounding fermentation. Additionally, K. diospyri exhibits symbiotic relationships with other microorganisms, such as yeasts and other bacteria, which can enhance the overall fermentation efficiency and product quality. These interactions are essential for maintaining the balance of microbial communities in the fermentation ecosystems. The adaptability of K. diospyri to varying concentrations of sugar and its ability to thrive in slightly acidic conditions make it well-suited for its habitats. This organism is often found in natural environments where fruits are abundant, such as orchards and gardens, as well as in artisanal fermentation facilities where traditional methods are employed. Overall, Komagataeibacter diospyri exemplifies the intricate relationships within its biome, showcasing its importance in both ecological and cultural contexts.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Komagataeibacter diospyri has shown significant potential in various industrial applications. One of the most notable areas is in biotechnology, where it is utilized for the production of cellulose. This organism is known for its ability to synthesize high-quality bacterial cellulose, which is used in the food industry as a thickener and stabilizer, as well as in the production of biodegradable materials. The fermentation process employed by Komagataeibacter diospyri allows for the conversion of sugars into cellulose, making it a valuable asset in sustainable material production. In the realm of waste management, Komagataeibacter diospyri has been studied for its potential in biodegradation processes. It can help in the breakdown of organic waste, contributing to the reduction of landfill waste and promoting a circular economy. The ability of this microorganism to thrive in various environmental conditions makes it a candidate for bioremediation efforts, where it can assist in the detoxification of polluted environments. Furthermore, the enzymatic activity of Komagataeibacter diospyri is of interest in pharmaceutical development. The enzymes produced by this microorganism can be harnessed for the synthesis of bioactive compounds, which may lead to the discovery of new drugs or therapeutic agents. This highlights its potential role in the pharmaceutical industry, particularly in the development of novel treatments. Overall, Komagataeibacter diospyri demonstrates a multifaceted utility across several industries, particularly in biotechnology, waste management, and pharmaceutical development, showcasing its importance in advancing sustainable practices and innovative solutions.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	mistralai/mistral-7b-instruct	meta-llama/llama-3-70b-instruct:nitro	google/gemini-flash-1.5	google/gemini-pro-1.5	google/gemma-7b-it	mistralai/mixtral-8x7b-instruct:nitro	openchat/openchat-7b	anthropic/claude-3-haiku:beta	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-4o	openai/gpt-4o	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	google/gemini-pro	google/gemini-pro	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	FALSE	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain positive ✗	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain positive ✗
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerotolerant ✗	aerotolerant ✗	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	false	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	false	false	false	true	false	false	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true
Host association	FALSE	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Plant pathogenicity	FALSE	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	N/A	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	coccus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	coccus	coccus	bacillus	bacillus

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