Pseudomonas alloputida

General Information

Pseudomonas alloputida is a fascinating microorganism within the genus Pseudomonas, known for its metabolic versatility and environmental adaptability. One of the most remarkable features of P. alloputida is its ability to degrade a wide range of organic pollutants, making it a valuable candidate for bioremediation efforts. This species can break down complex hydrocarbons and other toxic compounds, which is particularly useful in cleaning up contaminated soil and water environments. Another noteworthy characteristic of P. alloputida is its production of secondary metabolites, including antibiotics and siderophores. These compounds not only help the bacterium to outcompete other microorganisms in its habitat but also have potential applications in medicine and agriculture. The production of siderophores, for instance, aids in iron acquisition, which is crucial for bacterial growth and survival in iron-limited environments. From a research perspective, P. alloputida is also interesting due to its genetic and phenotypic plasticity. The organism's genome encodes a variety of regulatory systems that allow it to adapt to different environmental conditions. This adaptability is a subject of ongoing research, as understanding these regulatory mechanisms can provide insights into bacterial survival strategies and the evolution of metabolic pathways. In summary, Pseudomonas alloputida stands out due to its bioremediation potential, production of bioactive compounds, and genetic adaptability, making it a valuable organism for both environmental and biomedical research.

Pseudomonas alloputida is a fascinating bacterium known for its remarkable metabolic versatility and ability to thrive in diverse environments. This species is particularly interesting due to its capacity to degrade a wide range of organic compounds, including aromatic hydrocarbons, which makes it a valuable organism in bioremediation efforts. Its unique enzymatic pathways allow it to break down pollutants that are often resistant to degradation, thus playing a crucial role in environmental cleanup processes. One of the standout features of Pseudomonas alloputida is its ability to utilize various carbon sources, which enables it to adapt to different ecological niches. This adaptability is not only significant for survival in fluctuating environments but also highlights its potential in industrial applications, such as the production of bioplastics and biofuels. Additionally, Pseudomonas alloputida has been studied for its interactions with plant roots, where it can promote plant growth through mechanisms such as nutrient solubilization and the production of plant growth-promoting substances. This characteristic positions it as a candidate for use in sustainable agriculture, where it could enhance crop yields while reducing the need for chemical fertilizers. Overall, the metabolic capabilities and ecological interactions of Pseudomonas alloputida make it a subject of significant interest in both environmental microbiology and applied sciences, offering promising avenues for research and practical applications in bioremediation and agriculture.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas alloputida

NCBI ID

1940621

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/283/545/GCA_021283545.2_ASM2128354v2

File for sequence-based predictions:
GCA_021283545.2_ASM2128354v2_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas alloputida is a Gram-negative bacterium that has garnered attention for its potential clinical implications, particularly in the context of infections and its role in human health. While it is primarily known for its environmental presence, it has been isolated from clinical specimens, indicating a possible association with opportunistic infections in immunocompromised patients. Pathogenicity is not as well-documented as in other Pseudomonas species, but its ability to survive in various environments suggests it may pose a risk in certain clinical settings. One of the notable aspects of Pseudomonas alloputida is its potential for antimicrobial resistance. Like other members of the Pseudomonas genus, it may exhibit resistance to multiple classes of antibiotics, complicating treatment options for infections. This resistance is often attributed to mechanisms such as efflux pumps, beta-lactamase production, and biofilm formation, which can hinder the effectiveness of standard antimicrobial therapies. In terms of human health, Pseudomonas alloputida has been studied for its role in bioremediation and its potential use in probiotics or therapeutics, although these applications are still under investigation. Its interactions with the human body, particularly in the gut microbiome, may influence health outcomes, but more research is needed to fully understand these dynamics. Overall, while Pseudomonas alloputida is not as widely recognized as a primary pathogen, its presence in clinical settings and potential for infections and antimicrobial resistance warrant further study to clarify its clinical relevance.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas alloputida is a versatile bacterium commonly found in a variety of habitat types, particularly in soil and aquatic environments. This microorganism thrives in nutrient-rich conditions, often associated with decaying organic matter, where it plays a crucial role in the decomposition process. Its ability to degrade a wide range of organic compounds makes it an important player in nutrient cycling within these ecosystems. Soil Biomes: In terrestrial ecosystems, Pseudomonas alloputida is frequently isolated from agricultural soils and rhizospheres of plants. Here, it engages in nutrient mobilization, enhancing the availability of essential elements like nitrogen and phosphorus for plant uptake. This bacterium can also exhibit plant growth-promoting traits, such as the production of phytohormones, which can lead to improved plant health and yield. Aquatic Biomes: In freshwater and marine environments, Pseudomonas alloputida contributes to the breakdown of organic pollutants, showcasing its potential in bioremediation. Its metabolic versatility allows it to utilize various carbon sources, making it effective in degrading hydrocarbons and other contaminants. This capability not only aids in cleaning polluted waters but also supports the overall health of aquatic ecosystems by maintaining water quality. Overall, Pseudomonas alloputida exemplifies the intricate relationships within its biomes, participating in symbiotic interactions with plants and contributing to the ecological balance through its metabolic activities. Its adaptability to diverse environments underscores its significance in both natural and anthropogenic ecosystems.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas alloputida has shown significant potential in various industrial applications due to its versatile metabolic capabilities. One of the primary areas of interest is in biotechnology, where Pseudomonas alloputida is utilized for biodegradation of environmental pollutants. This organism can effectively break down complex organic compounds, making it valuable in waste management processes aimed at detoxifying contaminated sites, such as oil spills and industrial waste. In the realm of biofuel production, Pseudomonas alloputida has been studied for its ability to convert biomass into biofuels through fermentation processes. This capability allows for the transformation of agricultural waste into renewable energy sources, contributing to sustainable energy solutions. Furthermore, the organism is recognized for its role in pharmaceutical development. It can produce various enzymes that are crucial in the synthesis of pharmaceutical compounds, enhancing the efficiency of drug production. The enzymatic activity of Pseudomonas alloputida is particularly notable in the production of biocatalysts that facilitate chemical reactions in drug manufacturing. Overall, the diverse applications of Pseudomonas alloputida in biotechnology, waste management, biofuel production, and pharmaceutical development highlight its importance as a valuable microorganism in industrial processes.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	google/gemma-7b-it	google/gemini-flash-1.5	anthropic/claude-3.5-sonnet	anthropic/claude-3-haiku:beta	mistralai/mistral-7b-instruct	google/palm-2-chat-bison-32k	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/gemini-pro-1.5	google/gemini-pro-1.5	google/gemini-pro	google/gemini-pro	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	openai/gpt-4o	openai/gpt-4o
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	N/A	N/A	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	true ✗	false ✓	true ✗	true ✗	false ✓	true ✗	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	true	false	false	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	false	false	true	false	true	false	false	false	false	true	true	false	false	true	true	true	true	true	true	true	true	true	true
Host association	FALSE	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	alpha	gamma	N/A	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	spirillum ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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