Pseudomonas shirazica

General Information

Pseudomonas shirazica is a fascinating microorganism within the diverse genus Pseudomonas. This species was first isolated from agricultural soil in Shiraz, Iran, which hints at its potential role in soil health and plant interactions. One of the most intriguing aspects of Pseudomonas shirazica is its ability to produce a variety of secondary metabolites, which can have significant implications for biocontrol and bioremediation. Pseudomonas species are well-known for their metabolic versatility, and P. shirazica is no exception. It can utilize a wide range of organic compounds, making it a valuable candidate for studies on biodegradation and the breakdown of environmental pollutants. This metabolic flexibility also suggests potential applications in industrial microbiology, where such organisms can be harnessed for the production of valuable biochemicals. Another key characteristic of Pseudomonas shirazica is its potential for plant growth promotion. Like other Pseudomonas species, it may produce plant growth-promoting substances such as siderophores, which help plants acquire iron from the soil, and phytohormones, which can enhance plant growth and resilience. This makes P. shirazica a promising candidate for sustainable agriculture practices, where it could be used to reduce the need for chemical fertilizers and pesticides. In summary, Pseudomonas shirazica stands out due to its metabolic diversity, potential for biocontrol and bioremediation, and plant growth-promoting abilities. These characteristics make it a valuable subject for ongoing research in environmental microbiology, agriculture, and industrial applications.

Pseudomonas shirazica is a fascinating bacterium that was first isolated from Shiraz wine, highlighting its unique association with the fermentation process and its potential role in the wine industry. This organism is particularly interesting due to its ability to thrive in environments rich in polyphenols, which are abundant in grape must. This characteristic suggests that Pseudomonas shirazica may possess specialized metabolic pathways that allow it to utilize these compounds effectively, making it a valuable subject for research in microbial metabolism and biochemistry. One of the most notable features of Pseudomonas shirazica is its production of various secondary metabolites, which can have implications for both flavor development in wine and potential antimicrobial properties. The exploration of these metabolites could lead to innovative applications in food preservation and enhancement, as well as in the development of natural antimicrobial agents. Additionally, Pseudomonas shirazica has garnered attention for its potential in bioremediation. Its adaptability to different environmental conditions and its metabolic versatility may allow it to degrade pollutants, particularly in agricultural settings where wine production occurs. This aspect opens avenues for research into sustainable practices in viticulture and environmental management. Overall, Pseudomonas shirazica stands out not only for its ecological role in winemaking but also for its potential applications in biotechnology, making it a significant organism for further study in both microbiology and applied sciences.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas shirazica

NCBI ID

1940636

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/168/335/GCA_015168335.1_ASM1516833v1

File for sequence-based predictions:
GCA_015168335.1_ASM1516833v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas shirazica is a Gram-negative bacterium that has been identified in various clinical settings, particularly in association with infections in immunocompromised patients. It is part of the Pseudomonas genus, which is known for its environmental versatility and ability to thrive in diverse conditions. This organism has been linked to hospital-acquired infections, particularly in patients with underlying health conditions or those undergoing invasive procedures. Its pathogenicity is attributed to its ability to form biofilms, which enhances its resistance to both the host immune response and antimicrobial agents. One of the significant clinical implications of Pseudomonas shirazica is its potential for antimicrobial resistance. Like other members of the Pseudomonas genus, it may exhibit resistance to multiple classes of antibiotics, complicating treatment options for infected patients. This resistance is often mediated by mechanisms such as the production of beta-lactamases, efflux pumps, and alterations in membrane permeability, which can lead to treatment failures and prolonged hospital stays. In terms of immune evasion, Pseudomonas shirazica can manipulate host immune responses, allowing it to persist in the host and evade clearance. This includes the production of virulence factors that inhibit phagocytosis and modulate inflammatory responses, contributing to its pathogenic profile. While research on Pseudomonas shirazica is still emerging, its identification in clinical samples underscores the need for ongoing surveillance and understanding of its role in human health and disease. Further studies are necessary to elucidate its full clinical significance, including potential applications in probiotics or other therapeutic avenues, although such applications are not yet well-documented.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas shirazica is a bacterium primarily associated with vineyards and grape-growing regions, particularly in arid and semi-arid climates. This microorganism thrives in the rhizosphere of grapevines, where it plays a crucial role in promoting plant health and growth. Its presence is often linked to enhanced nutrient availability, particularly nitrogen, which is vital for the development of grapevines in nutrient-poor soils. In these agricultural biomes, Pseudomonas shirazica engages in mutualistic interactions with the roots of grapevines, aiding in the uptake of essential minerals and water. This symbiotic relationship not only benefits the plants but also contributes to the overall soil health by improving microbial diversity and activity. Additionally, Pseudomonas shirazica is known for its ability to degrade organic compounds, which can help in the bioremediation of contaminated soils in vineyard areas. Its metabolic versatility allows it to adapt to various environmental stresses, such as drought and salinity, making it a resilient inhabitant of these vineyard ecosystems. Overall, Pseudomonas shirazica exemplifies the intricate relationships within terrestrial ecosystems, showcasing its importance in sustainable agriculture and environmental health.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas shirazica has shown significant potential in various industrial applications due to its versatile metabolic capabilities. One of the primary areas of interest is in biotechnology, where Pseudomonas shirazica is utilized in biodegradation processes. This organism can effectively break down complex organic pollutants, making it valuable in waste management strategies aimed at treating contaminated environments, such as oil spills and industrial waste sites. In the realm of biofuel production, Pseudomonas shirazica has been studied for its ability to convert waste materials into biofuels through fermentation processes. This conversion not only helps in waste reduction but also contributes to sustainable energy solutions by producing bioethanol and biodiesel from organic substrates. Furthermore, the enzymatic activities of Pseudomonas shirazica are of great interest in pharmaceutical development. The organism is known to produce various enzymes that can be harnessed for the synthesis of pharmaceutical compounds, enhancing the efficiency of drug production processes. Overall, Pseudomonas shirazica exemplifies a microorganism with diverse applications across multiple industries, particularly in biodegradation, biofuel production, and enzyme production, making it a valuable asset in the pursuit of sustainable industrial practices.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	anthropic/claude-3-haiku:beta	google/gemini-pro	google/gemma-7b-it	mistralai/mistral-7b-instruct	google/gemini-flash-1.5	google/palm-2-chat-bison-32k	mistralai/mixtral-8x7b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/gemini-pro-1.5	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	openai/gpt-4o	openai/gpt-4o
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	TRUE	true ✓	true ✓	true ✓	false ✗	true ✓	false ✗	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗
Biosafety level	biosafety level 1	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	false	true	true	true	true	false	false	true	true	false	false	true	true	true	true	true	true	true	true	true	true	true	true
Host association	FALSE	true ✗	true ✗	false ✓	true ✗	true ✗	false ✓	true ✗	true ✗	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Plant pathogenicity	FALSE	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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