Pseudomonas koreensis

General Information

Pseudomonas koreensis is a fascinating microorganism that belongs to the genus Pseudomonas, which is known for its metabolic diversity and environmental versatility. This species was first isolated from soil in Korea, and it has since garnered interest for several reasons. One of the most intriguing aspects of Pseudomonas koreensis is its bioremediation potential. This bacterium has shown the ability to degrade various environmental pollutants, including polycyclic aromatic hydrocarbons (PAHs) and other organic contaminants. This makes it a valuable candidate for cleaning up polluted environments, particularly in soil and water ecosystems. Additionally, Pseudomonas koreensis exhibits plant growth-promoting properties. It can produce siderophores, which are compounds that bind and sequester iron from the environment, making it more available to plants. This can enhance plant growth and health, making Pseudomonas koreensis a potential biofertilizer in agricultural applications. From a research perspective, the genetic and metabolic pathways of Pseudomonas koreensis are of significant interest. The bacterium's genome has been sequenced, revealing a wealth of genes involved in various metabolic processes, including those for the degradation of complex organic compounds. This genetic information provides a foundation for further studies on the mechanisms underlying its bioremediation and plant growth-promoting activities. In summary, Pseudomonas koreensis is a microorganism of considerable interest due to its environmental and agricultural applications. Its ability to degrade pollutants and promote plant growth, coupled with its well-characterized genetic makeup, makes it a valuable subject for ongoing and future research.

Pseudomonas koreensis is a fascinating bacterium belonging to the genus Pseudomonas, which is known for its metabolic versatility and ecological significance. This species was first isolated from soil in Korea, highlighting its environmental adaptability. One of the most interesting aspects of P. koreensis is its ability to degrade a variety of organic compounds, making it a potential candidate for bioremediation applications. This characteristic is particularly valuable in the context of environmental cleanup, as it can help in the breakdown of pollutants such as hydrocarbons and other toxic substances. Moreover, P. koreensis has been studied for its production of various secondary metabolites, which may possess antimicrobial properties. This opens up avenues for research into new antibiotics or biocontrol agents, especially in an era where antibiotic resistance is a growing concern. The genetic and biochemical pathways involved in these processes are of significant interest to researchers aiming to harness the potential of this organism for pharmaceutical applications. Additionally, P. koreensis exhibits a unique ability to thrive in diverse environments, including extreme conditions, which makes it a model organism for studying stress responses and survival mechanisms in bacteria. Its resilience and adaptability provide insights into microbial ecology and evolution, further enhancing its value in scientific research. Overall, Pseudomonas koreensis stands out not only for its environmental applications but also for its potential contributions to biotechnology and medicine.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas koreensis

NCBI ID

198620

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/026/314/355/GCF_026314355.1_ASM2631435v1

File for sequence-based predictions:
GCF_026314355.1_ASM2631435v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas koreensis is a member of the Pseudomonas genus, which is known for its environmental versatility and clinical significance. It has been associated with various infections, particularly in immunocompromised patients. Clinical implications of Pseudomonas koreensis include its potential role in nosocomial infections, where it can cause pneumonia, bacteremia, and wound infections. Its pathogenicity is attributed to its ability to form biofilms and produce a range of virulence factors, which facilitate immune evasion and enhance its survival in hostile environments, such as those found in hospital settings. Moreover, Pseudomonas koreensis exhibits antimicrobial resistance, particularly to beta-lactam antibiotics, which poses a significant challenge in treatment. This resistance is often due to the production of beta-lactamases and alterations in membrane permeability, making infections difficult to manage. In terms of medical applications, while Pseudomonas koreensis is not commonly used as a probiotic or therapeutic agent, its close relatives in the Pseudomonas genus are studied for their potential in bioremediation and as models for understanding microbial resistance mechanisms. Overall, the clinical relevance of Pseudomonas koreensis underscores the importance of monitoring its presence in clinical settings and understanding its role in human health and disease.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas koreensis is a versatile bacterium commonly found in various habitat types across different biomes. This microorganism thrives in soil ecosystems, particularly in nutrient-rich environments where organic matter is abundant. It plays a crucial role in the decomposition of organic materials, contributing to nutrient cycling and soil health. Its ability to degrade pollutants makes it an important player in bioremediation processes, helping to clean contaminated environments and restore ecological balance. In addition to soil, Pseudomonas koreensis has been isolated from aquatic environments, including freshwater systems. Here, it interacts with other microorganisms and contributes to the overall microbial community structure. Its metabolic versatility allows it to adapt to varying conditions, such as changes in nutrient availability and the presence of toxic compounds. Furthermore, Pseudomonas koreensis exhibits symbiotic relationships with plants, promoting plant growth through mechanisms such as nitrogen fixation and the production of growth-promoting substances. This interaction enhances the health of the plants and contributes to the stability of the ecosystem. Overall, Pseudomonas koreensis is a key organism in both terrestrial and aquatic biomes, showcasing its adaptability and essential roles in maintaining ecological integrity.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas koreensis has shown significant potential in various industrial applications due to its versatile metabolic capabilities. One of the primary areas of interest is in biotechnology, where Pseudomonas koreensis is utilized for biodegradation of environmental pollutants. This organism can effectively break down complex organic compounds, making it valuable in the treatment of contaminated soils and wastewater. Its ability to degrade hydrocarbons positions it as a candidate for bioremediation processes aimed at cleaning up oil spills and other petroleum-related contaminants. In the realm of waste management, Pseudomonas koreensis contributes to the treatment of industrial effluents by metabolizing toxic substances, thus reducing the environmental impact of waste disposal. This capability is particularly beneficial in industries that produce hazardous waste, as it can help in the detoxification and safe disposal of harmful chemicals. Furthermore, Pseudomonas koreensis has been explored for its role in biofuel production. The organism can participate in fermentation processes that convert organic materials into biofuels, such as ethanol and biodiesel. Its metabolic pathways can be harnessed to improve the efficiency of biofuel production, making it a valuable asset in the renewable energy sector. In pharmaceutical development, Pseudomonas koreensis is noted for its potential in the production of various bioactive compounds, including antibiotics and enzymes. The organism's enzymatic activity can be exploited for the synthesis of pharmaceuticals, providing a sustainable alternative to traditional chemical synthesis methods. Overall, the diverse applications of Pseudomonas koreensis in biotechnology, waste management, biofuel production, and pharmaceutical development highlight its importance as a versatile microorganism in industrial processes.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 11

LLM predicted phenotypes: 2

Phenotype	High-quality annotation	google/gemma-7b-it	meta-llama/llama-3-70b-instruct:nitro	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	google/gemini-pro	google/gemini-flash-1.5	mistralai/mixtral-8x7b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-4o	openai/gpt-4o	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	anthropic/claude-3-haiku:beta	anthropic/claude-3-haiku:beta
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	N/A	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	TRUE	true ✓	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗
Biosafety level	biosafety level 1	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true
Host association	FALSE	true ✗	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Plant pathogenicity	FALSE	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	gamma	alpha ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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