Vibrio pomeroyi

General Information

Vibrio pomeroyi is a marine bacterium that has garnered attention due to its unique ecological role and metabolic capabilities. This microorganism is particularly interesting because it is part of the Vibrio genus, which includes species known for their diverse interactions with marine environments and organisms. One of the key characteristics of Vibrio pomeroyi is its ability to degrade dimethylsulfoniopropionate (DMSP), a sulfur-containing compound produced by marine algae. The degradation of DMSP is significant because it leads to the production of dimethyl sulfide (DMS), a gas that plays a crucial role in the global sulfur cycle and has implications for climate regulation due to its influence on cloud formation. Additionally, Vibrio pomeroyi is notable for its genomic adaptability. The genome of this bacterium reveals a high degree of plasticity, which allows it to thrive in various marine environments. This adaptability is facilitated by a large number of genes involved in nutrient acquisition and metabolism, enabling Vibrio pomeroyi to utilize a wide range of organic compounds. From a research perspective, Vibrio pomeroyi is valuable for studying marine microbial ecology and biogeochemical cycles. Its interactions with marine algae and its role in the sulfur cycle make it a model organism for understanding the complex dynamics of marine ecosystems. Furthermore, the metabolic pathways involved in DMSP degradation are of interest for biotechnological applications, such as the development of biofilters for sulfur compounds. In summary, Vibrio pomeroyi stands out due to its ecological importance, metabolic versatility, and potential applications in environmental and biotechnological research. Its ability to influence the sulfur cycle and adapt to diverse marine environments makes it a fascinating subject for further study.

Vibrio pomeroyi is a fascinating marine bacterium that plays a significant role in the biogeochemical cycling of sulfur and carbon in coastal environments. This organism is particularly interesting due to its ability to utilize a variety of organic compounds, including dimethylsulfoniopropionate (DMSP), which is a key compound produced by marine phytoplankton. The metabolism of DMSP by V. pomeroyi not only contributes to the sulfur cycle but also influences climate regulation through the production of dimethyl sulfide (DMS), a gas that can affect cloud formation and climate patterns. One of the unique aspects of V. pomeroyi is its capacity for sulfate reduction, which allows it to thrive in anoxic conditions often found in marine sediments. This capability makes it a valuable model organism for studying anaerobic processes and the interactions between microbial communities in marine ecosystems. Additionally, V. pomeroyi has been the subject of research due to its potential applications in biotechnology, particularly in the fields of bioremediation and bioenergy. Its metabolic pathways can be harnessed to degrade pollutants or to produce biofuels, making it a promising candidate for sustainable environmental solutions. Overall, the ecological significance, metabolic versatility, and potential biotechnological applications of Vibrio pomeroyi underscore its importance in both marine microbiology and environmental science.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Vibrionales

Family: Vibrionaceae

Genus: Vibrio

Species: Vibrio pomeroyi

NCBI ID

198832

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/347/595/GCF_024347595.1_ASM2434759v1

File for sequence-based predictions:
GCF_024347595.1_ASM2434759v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Vibrio pomeroyi is a marine bacterium that has garnered attention for its potential role in human health and disease. While it is primarily known for its ecological significance in marine environments, its clinical implications are emerging. Vibrio pomeroyi is associated with the degradation of organic matter in marine ecosystems, which can influence the overall health of these environments. However, its relevance to human health is less direct but noteworthy. Pathogenicity: Although Vibrio pomeroyi is not typically classified as a human pathogen, it belongs to the Vibrio genus, which includes several species known to cause gastrointestinal infections and wound infections. The potential for opportunistic infections exists, particularly in immunocompromised individuals or those with underlying health conditions. Antimicrobial Resistance: There is limited data on the antimicrobial resistance profiles of Vibrio pomeroyi, but the Vibrio genus is known for its ability to acquire resistance genes, which raises concerns about the treatment of infections caused by related species. Monitoring for resistance patterns is essential, especially in the context of environmental exposure. Medical Applications: Research into Vibrio pomeroyi may also yield insights into biotechnological applications, such as bioremediation and nutrient cycling in marine environments. Understanding its metabolic pathways could lead to innovations in environmental health. Immune Evasion Strategies: While specific immune evasion strategies of Vibrio pomeroyi are not well-documented, related Vibrio species have developed mechanisms to evade the immune response, such as biofilm formation and the production of virulence factors. These strategies could potentially inform future studies on how Vibrio pomeroyi interacts with host organisms. In summary, while Vibrio pomeroyi is not a primary pathogen, its ecological role and potential for opportunistic infections warrant further investigation to fully understand its clinical implications.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Vibrio pomeroyi has shown significant potential in various industrial applications, particularly in the fields of biotechnology, waste management, and biofuel production. This marine bacterium is known for its ability to degrade organic matter, making it a valuable player in biodegradation processes. Its enzymatic activity allows it to break down complex organic compounds, which can be harnessed for waste treatment in aquatic environments, thus contributing to the reduction of pollution and the enhancement of water quality. In the realm of biofuel production, Vibrio pomeroyi has been studied for its capacity to metabolize hydrocarbons, which can be utilized in the conversion of waste materials into biofuels. This process involves fermentation pathways that convert organic substrates into energy-rich compounds, potentially leading to sustainable energy solutions. Moreover, Vibrio pomeroyi has implications in pharmaceutical development due to its unique metabolic pathways that can be explored for the production of bioactive compounds. The organism's ability to produce specific enzymes can be leveraged in enzyme production for various industrial applications, including the synthesis of pharmaceuticals and other valuable chemicals. Overall, the diverse metabolic capabilities of Vibrio pomeroyi position it as a promising candidate for innovative solutions in environmental management, energy production, and biotechnology.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	google/gemma-7b-it	mistralai/mistral-7b-instruct	google/gemini-flash-1.5	openai/gpt-4o	openai/gpt-4o	anthropic/claude-3-haiku:beta	meta-llama/llama-3-8b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	google/gemini-pro-1.5	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	openai/gpt-4	openai/gpt-4	google/gemini-pro	google/gemini-pro	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	N/A	aerotolerant ✗	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	true ✗	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	TRUE	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗
Biosafety level	biosafety level 1	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	true	true	true	true	false	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true	false	false	true	true
Host association	FALSE	true ✗	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	alpha	N/A	gamma	beta	beta	beta	N/A	N/A	N/A	N/A	beta	beta	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	spirillum ✗	spirillum ✗

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