Burkholderia aenigmatica

General Information

Burkholderia aenigmatica is a fascinating microorganism that belongs to the genus Burkholderia, which is known for its metabolic versatility and ecological diversity. One of the most intriguing aspects of B. aenigmatica is its ability to thrive in a variety of environmental conditions, making it a subject of interest for researchers studying microbial ecology and environmental microbiology. One of the key characteristics of B. aenigmatica is its potential for bioremediation. Members of the Burkholderia genus are known for their ability to degrade a wide range of organic pollutants, and B. aenigmatica is no exception. This makes it a valuable candidate for cleaning up contaminated environments, particularly those polluted with complex organic compounds. Another interesting feature of B. aenigmatica is its genomic adaptability. The genome of B. aenigmatica contains a large number of genes associated with environmental adaptability, including those involved in the degradation of various substrates and resistance to toxic compounds. This genetic flexibility allows the organism to survive and proliferate in diverse and often harsh environments. From a biotechnological perspective, B. aenigmatica holds promise due to its production of secondary metabolites. These compounds can have antimicrobial, antifungal, or even anticancer properties, making B. aenigmatica a potential source of new pharmaceuticals. The study of these secondary metabolites can lead to the discovery of novel drugs and therapeutic agents. In summary, Burkholderia aenigmatica is a microorganism of significant interest due to its environmental resilience, bioremediation potential, and biotechnological applications. Its ability to adapt to various conditions and produce valuable secondary metabolites makes it a valuable subject for ongoing research in multiple scientific fields.

Burkholderia aenigmatica is a fascinating bacterium that has garnered attention due to its unique ecological niche and potential applications in biotechnology. This species is part of the Burkholderia genus, which is known for its diverse metabolic capabilities and adaptability to various environments, including soil and water. One of the most interesting aspects of B. aenigmatica is its ability to thrive in extreme conditions, which makes it a subject of interest for researchers studying extremophiles and their potential uses in bioremediation and environmental management. Unique Metabolic Pathways: B. aenigmatica possesses unique metabolic pathways that allow it to degrade complex organic compounds, including certain pollutants. This characteristic positions it as a potential candidate for bioremediation efforts, particularly in contaminated environments where traditional methods may fail. Genomic Insights: The genome of B. aenigmatica has been sequenced, revealing insights into its genetic makeup and the presence of genes associated with antibiotic resistance and virulence factors. This information is crucial for understanding its interactions with other microorganisms and its role in various ecosystems. Potential in Agriculture: Preliminary studies suggest that B. aenigmatica may have beneficial effects on plant growth, possibly through mechanisms such as nitrogen fixation or the production of plant growth-promoting substances. This potential makes it an interesting candidate for agricultural applications, particularly in sustainable farming practices. Research Implications: The study of B. aenigmatica contributes to the broader understanding of the Burkholderia genus, which includes both beneficial and pathogenic species. Understanding the ecological roles and interactions of B. aenigmatica can provide valuable insights into microbial ecology and the development of new biotechnological applications. In summary, Burkholderia aenigmatica stands out due to its unique metabolic capabilities, potential agricultural benefits, and the insights it offers into the complex interactions within microbial communities. Its study not only enhances our understanding of microbial diversity but also opens avenues for practical applications in environmental and agricultural biotechnology.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Betaproteobacteria

Order: Burkholderiales

Family: Burkholderiaceae

Genus: Burkholderia

Species: Burkholderia aenigmatica

NCBI ID

2015348

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/021/899/435/GCA_021899435.1_ASM2189943v1

File for sequence-based predictions:
GCA_021899435.1_ASM2189943v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Burkholderia aenigmatica is a member of the Burkholderia genus, which is known for its diverse ecological roles and clinical significance. This bacterium has been associated with various infections, particularly in immunocompromised individuals. Its pathogenicity is attributed to its ability to evade the immune response through mechanisms such as biofilm formation and the secretion of virulence factors that inhibit phagocytosis. Clinical implications include its potential role in chronic lung infections, especially in patients with cystic fibrosis or other underlying respiratory conditions. Furthermore, B. aenigmatica has shown antimicrobial resistance, complicating treatment options and necessitating careful antibiotic stewardship. The organism's resistance mechanisms may involve the production of beta-lactamases and efflux pumps, which contribute to its survival in hostile environments. While research is ongoing, there is a growing interest in understanding the role of B. aenigmatica in the human microbiome and its potential applications in therapeutics or as a target for vaccine development. Overall, the clinical relevance of Burkholderia aenigmatica underscores the need for heightened awareness and further investigation into its pathogenic potential and interactions with human health.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Burkholderia aenigmatica is a versatile bacterium commonly associated with a variety of habitat types, particularly in soil and plant-associated environments. This microorganism thrives in nutrient-rich soils, often found in agricultural settings where it can interact with various plant species. Its ability to adapt to different soil types allows it to occupy diverse ecological niches, making it a significant player in the microbial community. In its natural habitats, Burkholderia aenigmatica engages in nutrient cycling, contributing to the breakdown of organic matter and enhancing soil fertility. This bacterium is known for its role in symbiotic relationships with plants, where it can promote plant growth by facilitating nutrient uptake, particularly nitrogen. Such interactions are crucial in agroecosystems, where sustainable practices are increasingly important. Additionally, Burkholderia aenigmatica has been documented in rhizosphere environments, where it can influence plant health and resilience against pathogens. Its presence in these areas underscores its importance in plant-microbe interactions, which are vital for maintaining ecosystem balance and productivity. Overall, the ecological role of Burkholderia aenigmatica in its associated biomes highlights its adaptability and significance in both natural and managed ecosystems.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Burkholderia aenigmatica has shown potential in various industrial applications, particularly in the fields of biotechnology and waste management. This organism is known for its ability to thrive in diverse environments, which makes it a candidate for biodegradation processes, where it can break down complex organic compounds, including pollutants and waste materials. This capability is particularly valuable in the treatment of contaminated soils and water, contributing to environmental remediation efforts. In the realm of biofuel production, Burkholderia aenigmatica may play a role in the fermentation of biomass, converting organic materials into bioethanol or other biofuels. Its metabolic pathways can be harnessed to optimize the conversion efficiency of lignocellulosic materials, which are abundant and renewable resources. Moreover, this microorganism has been studied for its potential in pharmaceutical development, particularly in the production of bioactive compounds. Its unique enzymatic activities can be utilized in the synthesis of pharmaceuticals, where specific enzymes are required for the modification of drug compounds. Overall, Burkholderia aenigmatica represents a versatile organism with promising applications in waste treatment, biofuel production, and biopharmaceuticals, making it a valuable asset in the ongoing search for sustainable industrial solutions.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	google/gemini-flash-1.5	mistralai/mixtral-8x7b-instruct:nitro	anthropic/claude-3.5-sonnet	anthropic/claude-3-haiku:beta	mistralai/mistral-7b-instruct	meta-llama/llama-3-70b-instruct:nitro	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	google/gemma-7b-it	google/gemma-7b-it	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/gemini-pro-1.5	google/gemini-pro-1.5	google/gemini-pro	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	openai/gpt-4o	openai/gpt-4o
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	N/A	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	true	false	true	true	false	true	false	false	true	true	false	false	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true
Biosafety level	biosafety level 2	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓
Health association	N/A	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true
Host association	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Plant pathogenicity	FALSE	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Hemolysis	gamma	gamma ✓	N/A	beta ✗	beta ✗	N/A	N/A	N/A	N/A	alpha ✗	alpha ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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