Ramlibacter henchirensis

General Information

Ramlibacter henchirensis is a fascinating microorganism that belongs to the genus Ramlibacter. This bacterium was first isolated from a soil sample collected in Tunisia, which highlights its adaptability to diverse and potentially harsh environmental conditions. One of the most intriguing aspects of R. henchirensis is its ability to survive in arid environments, making it a subject of interest for studies on microbial life in extreme conditions. The bacterium's genome reveals a wealth of information about its metabolic capabilities, including genes that may be involved in the degradation of complex organic compounds. This suggests that R. henchirensis could play a significant role in soil nutrient cycling and organic matter decomposition, which are critical processes in maintaining soil health and fertility. Another noteworthy feature of R. henchirensis is its potential for biotechnological applications. The enzymes produced by this bacterium could be harnessed for industrial processes, such as the breakdown of pollutants or the production of biofuels. Additionally, its resilience to desiccation and other stressors makes it a model organism for studying microbial survival strategies. In summary, Ramlibacter henchirensis is a microorganism of considerable interest due to its environmental resilience, metabolic versatility, and potential applications in biotechnology. Its study not only enhances our understanding of microbial ecology but also opens up new avenues for practical applications in various industries.

Ramlibacter henchirensis is a fascinating bacterium that was first isolated from a hypersaline environment, specifically from the salt flats of the Henchir region in Tunisia. This organism is particularly interesting due to its extreme halophilic nature, allowing it to thrive in environments with high salt concentrations that would be inhospitable to most other life forms. Its ability to adapt to such extreme conditions makes it a valuable subject for research in the fields of microbial ecology and extremophiles. One of the unique characteristics of R. henchirensis is its potential for biotechnological applications. The enzymes produced by this bacterium are of great interest for industrial processes that require high salt concentrations, such as the production of certain biochemicals and the bioremediation of saline environments. Furthermore, the study of its metabolic pathways can provide insights into how life can adapt to extreme conditions, which has implications for understanding the limits of life on Earth and potentially on other planets. Additionally, R. henchirensis has been noted for its genetic diversity, which can be explored to uncover novel genes and metabolic pathways. This genetic variability is crucial for researchers aiming to harness the unique properties of halophilic microorganisms for various applications, including the development of new drugs and the enhancement of agricultural practices in saline soils. In summary, Ramlibacter henchirensis stands out not only for its resilience in extreme environments but also for its potential contributions to science and industry, making it a significant organism for ongoing research.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Betaproteobacteria

Order: Burkholderiales

Family: Comamonadaceae

Genus: Ramlibacter

Species: Ramlibacter henchirensis

NCBI ID

204072

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/682/015/GCF_004682015.1_ASM468201v1

File for sequence-based predictions:
GCF_004682015.1_ASM468201v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Ramlibacter henchirensis is a member of the phylum Proteobacteria and has been identified in various environmental samples, particularly in soil and sediment. While its direct clinical implications in human health are not extensively documented, its presence in diverse ecosystems suggests potential interactions with human-associated microbiomes. Research indicates that members of the genus Ramlibacter may play a role in biogeochemical cycles, which could indirectly influence human health through environmental pathways. In terms of pathogenicity, there is currently limited evidence linking Ramlibacter henchirensis to specific diseases or infections in humans. However, its environmental prevalence raises questions about its potential as an opportunistic pathogen, particularly in immunocompromised individuals. Understanding the ecological role of this organism may provide insights into its interactions with human health, especially in relation to environmental exposures. Regarding antimicrobial resistance, there is no well-documented evidence of Ramlibacter henchirensis exhibiting resistance mechanisms. However, the study of environmental bacteria often reveals the presence of resistance genes, which could have implications for public health if these genes are transferred to pathogenic organisms. In summary, while Ramlibacter henchirensis does not have a well-defined role in human disease, its environmental significance and potential interactions with human microbiomes warrant further investigation to fully understand its implications for human health and disease.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Ramlibacter henchirensis is a bacterium that has been primarily isolated from marine environments, particularly from sediments in coastal areas. This organism thrives in anaerobic conditions, which are prevalent in these habitats due to the limited availability of oxygen. The ecological niche of R. henchirensis is characterized by its ability to degrade organic matter, playing a crucial role in the nutrient cycling within these marine sediments. In its habitat, R. henchirensis interacts with various other microorganisms, contributing to a complex microbial community. It is known to engage in symbiotic relationships with other bacteria, facilitating the breakdown of complex organic compounds. This process not only aids in the recycling of nutrients but also supports the overall health of the benthic ecosystem. Furthermore, R. henchirensis exhibits remarkable environmental adaptations, allowing it to survive in conditions that may be inhospitable to many other organisms. Its metabolic pathways are optimized for the utilization of available substrates in the sediment, showcasing its role as a decomposer in the ecosystem. This bacterium is essential for maintaining the balance of the marine biome, ensuring that organic materials are efficiently recycled back into the ecosystem.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Ramlibacter henchirensis has shown potential in various industrial applications, particularly in the fields of biotechnology, waste management, and biofuel production. This organism is known for its ability to thrive in extreme environments, which makes it a candidate for processes that require resilience and efficiency. In biotechnology, Ramlibacter henchirensis can be utilized in fermentation processes to produce valuable metabolites. Its unique metabolic pathways allow for the conversion of complex substrates into simpler compounds, which can be harnessed for the production of bioactive compounds or organic acids. In the realm of waste management, this microorganism has demonstrated capabilities in biodegradation of pollutants. It can break down various organic contaminants, making it useful in the treatment of industrial effluents and contaminated soils. This biodegradation process not only helps in detoxifying waste but also contributes to the recycling of nutrients back into the ecosystem. Furthermore, Ramlibacter henchirensis has potential in biofuel production. Its metabolic processes can be optimized for the conversion of biomass into biofuels, such as bioethanol or biodiesel, through fermentation of lignocellulosic materials. This application is particularly relevant in the context of sustainable energy solutions, as it offers a renewable alternative to fossil fuels. Additionally, the enzymatic activities of Ramlibacter henchirensis can be explored for pharmaceutical development. The enzymes produced by this microorganism may have applications in drug synthesis or as biocatalysts in various chemical reactions, enhancing the efficiency and specificity of pharmaceutical manufacturing processes. Overall, the diverse capabilities of Ramlibacter henchirensis in these industrial sectors highlight its significance as a versatile microorganism with promising applications in modern biotechnology and environmental management.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	google/gemini-flash-1.5	anthropic/claude-3.5-sonnet	google/gemini-pro-1.5	meta-llama/llama-3-70b-instruct:nitro	openchat/openchat-7b	meta-llama/llama-3-8b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	google/gemma-7b-it	google/gemma-7b-it	google/gemini-pro	google/gemini-pro	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-4o	openai/gpt-4o	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openai/gpt-4	openai/gpt-4	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	anthropic/claude-3-haiku:beta	anthropic/claude-3-haiku:beta	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	FALSE	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain positive ✗	gram stain negative ✓	gram stain positive ✗	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain variable ✗	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	N/A	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	anaerobic ✗	anaerobic ✗	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerotolerant ✗	aerotolerant ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	true ✗	true ✗	false ✓	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Biofilm formation	N/A	true	true	false	true	false	true	true	true	true	false	false	true	true	false	false	false	false	true	true	false	false	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	false	false	false	false	false	false	true	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 3 ✗	biosafety level 3 ✗
Health association	N/A	true	false	false	false	false	false	true	true	true	false	false	true	true	false	false	false	false	true	true	false	false	true	true	false	false	true	true	false	false
Host association	N/A	false	false	false	false	false	false	true	true	true	false	false	false	false	false	false	false	false	false	false	false	false	true	true	false	false	false	false	false	false
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	gamma	N/A	N/A	N/A	N/A	N/A	N/A	alpha	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗

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