Pseudomonas bohemica

General Information

Pseudomonas bohemica is a fascinating bacterium within the genus Pseudomonas, known for its diverse metabolic capabilities and environmental versatility. This microorganism was first isolated from soil in the Czech Republic, which is reflected in its species name, bohemica. One of the most intriguing aspects of Pseudomonas bohemica is its ability to degrade a variety of organic compounds, making it a valuable candidate for bioremediation efforts. The bacterium's metabolic flexibility allows it to thrive in various environments, including those contaminated with pollutants. This characteristic is particularly important for environmental microbiologists and biotechnologists who are exploring sustainable ways to clean up contaminated sites. Additionally, Pseudomonas bohemica has been studied for its potential in agricultural applications, such as promoting plant growth and protecting crops from pathogens through the production of bioactive compounds. Another noteworthy feature of Pseudomonas bohemica is its genetic adaptability. The bacterium possesses a versatile genome that enables it to respond to environmental stresses and adapt to changing conditions. This genetic plasticity is a subject of ongoing research, as understanding the mechanisms behind it could lead to advancements in microbial engineering and synthetic biology. In summary, Pseudomonas bohemica stands out due to its environmental resilience, metabolic diversity, and potential applications in bioremediation and agriculture. These characteristics make it a valuable organism for scientific research and practical applications aimed at addressing environmental and agricultural challenges.

Pseudomonas bohemica is a fascinating bacterium that has garnered attention due to its unique ecological niche and potential applications in biotechnology. This species is part of the diverse genus Pseudomonas, known for its metabolic versatility and ability to thrive in various environments, including soil, water, and plant surfaces. One of the most interesting aspects of P. bohemica is its ability to degrade a wide range of organic compounds, making it a valuable organism for bioremediation efforts. This capability allows it to break down pollutants, such as hydrocarbons and other toxic substances, which is crucial for environmental cleanup. Additionally, P. bohemica has been studied for its interactions with plants, particularly in promoting plant growth and health. It can produce plant growth-promoting substances, which can enhance nutrient uptake and stimulate root development. This characteristic positions P. bohemica as a potential candidate for use in sustainable agriculture, where it could help reduce the need for chemical fertilizers. Furthermore, the genetic and metabolic pathways of Pseudomonas species, including P. bohemica, are of significant interest in research. Understanding these pathways can lead to advancements in synthetic biology and the development of novel biotechnological applications. The organism's adaptability and resilience in various environments also make it a model organism for studying microbial ecology and evolution. Overall, Pseudomonas bohemica stands out not only for its ecological roles but also for its potential contributions to environmental sustainability and agricultural innovation.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas bohemica

NCBI ID

2044872

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/934/685/GCF_002934685.1_ASM293468v1

File for sequence-based predictions:
GCF_002934685.1_ASM293468v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas bohemica is a member of the Pseudomonas genus, which is known for its environmental versatility and opportunistic pathogenicity. While Pseudomonas bohemica is less commonly discussed than its more notorious relatives, it has been associated with infections in immunocompromised patients, particularly those with underlying health conditions or those undergoing invasive procedures. Clinical implications of this organism include its potential role in nosocomial infections, where it can be isolated from patients in healthcare settings, particularly in respiratory and urinary tract infections. One of the significant concerns regarding Pseudomonas bohemica is its antimicrobial resistance. Like many Pseudomonas species, it may exhibit resistance to multiple classes of antibiotics, complicating treatment options. This resistance is often attributed to its ability to form biofilms and its intrinsic mechanisms of resistance, which can include efflux pumps and enzymatic degradation of antibiotics. In terms of immune evasion, Pseudomonas bohemica can produce various virulence factors that help it evade the host's immune response, such as exopolysaccharides that contribute to biofilm formation, making it difficult for immune cells to clear the infection. While there is limited documentation on specific outbreaks directly linked to Pseudomonas bohemica, its presence in clinical samples underscores the importance of monitoring and understanding its role in human health. Further research is needed to fully elucidate its pathogenic potential and to explore any possible medical applications, such as its use in bioremediation or as a model organism for studying antibiotic resistance mechanisms.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas bohemica is a versatile bacterium commonly found in various habitat types and environments that are rich in organic matter. This microorganism thrives particularly well in soil ecosystems, where it plays a crucial role in nutrient cycling and organic matter decomposition. Its ability to degrade a wide range of organic compounds makes it an important player in maintaining soil health and fertility. In addition to soil, Pseudomonas bohemica is often associated with aquatic environments, including freshwater systems. Here, it contributes to the breakdown of pollutants and organic materials, thus aiding in the purification of water bodies. Its presence in these ecosystems can enhance the overall microbial diversity and stability of the aquatic biome. Furthermore, Pseudomonas bohemica exhibits notable interactions with plants, often engaging in symbiotic relationships that can promote plant growth. This bacterium can enhance nutrient availability to plants, particularly through the solubilization of phosphorus, which is essential for plant development. Overall, Pseudomonas bohemica is an ecologically significant microorganism that adapts well to various biomes, including terrestrial and aquatic environments, contributing to ecosystem functioning and health through its diverse metabolic capabilities and interactions with other organisms.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas bohemica has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where Pseudomonas bohemica is utilized for its ability to produce enzymes that can be harnessed in biocatalysis processes. These enzymes are valuable in the production of biofuels, as they can facilitate the breakdown of complex organic materials into simpler compounds that can be fermented into ethanol or other biofuels. In the realm of waste management, Pseudomonas bohemica has demonstrated capabilities in biodegradation, particularly in the breakdown of pollutants such as hydrocarbons and heavy metals. This makes it a candidate for use in bioremediation strategies aimed at cleaning up contaminated environments, such as oil spills or industrial waste sites. Furthermore, the organism has potential applications in pharmaceutical development. Its metabolic pathways can be exploited for the production of bioactive compounds, which may lead to the discovery of new drugs or therapeutic agents. The ability of Pseudomonas bohemica to produce secondary metabolites can be particularly useful in this context. Overall, Pseudomonas bohemica represents a versatile microorganism with applications spanning biotechnology, waste management, and pharmaceutical development, showcasing its importance in modern industrial processes.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	meta-llama/llama-3-70b-instruct:nitro	google/gemini-pro-1.5	google/gemini-pro	mistralai/mistral-7b-instruct	google/palm-2-chat-bison-32k	meta-llama/llama-3-8b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4	openai/gpt-4	openai/gpt-4o	openai/gpt-4o	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	anthropic/claude-3-haiku:beta	anthropic/claude-3-haiku:beta	google/gemma-7b-it	google/gemma-7b-it	google/gemini-flash-1.5	google/gemini-flash-1.5	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	true ✗	false ✓	true ✗	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	false	true	false	false	false	false	true	false	false	false	false	false	false	false	false	false	true	true	true	true	true	true	true	true	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	false	true	true	false	true	true	true	true	true	false	false	false	false	true	true	true	true	true	true	true	true	true	true	true	true	false	false
Host association	FALSE	false ✓	false ✓	true ✗	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Plant pathogenicity	FALSE	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	N/A	false	false	false	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Hemolysis	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	alpha	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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