Streptomyces dengpaensis

General Information

Streptomyces dengpaensis is a fascinating microorganism belonging to the genus Streptomyces, which is renowned for its prolific production of secondary metabolites. One of the most intriguing aspects of S. dengpaensis is its potential for producing novel antibiotics and other bioactive compounds. This makes it a valuable subject of study in the field of natural product chemistry and pharmaceutical research. Streptomyces species are well-known for their complex life cycle and ability to produce a wide array of secondary metabolites, including many clinically important antibiotics such as streptomycin, tetracycline, and erythromycin. S. dengpaensis is no exception and is being investigated for its unique metabolic pathways that could lead to the discovery of new drugs. Another interesting feature of S. dengpaensis is its ecological role. Streptomyces species are typically found in soil and are crucial for the decomposition of organic materials, contributing to soil health and nutrient cycling. This ecological importance adds another layer of interest to the study of S. dengpaensis, as understanding its interactions within soil ecosystems can provide insights into sustainable agricultural practices and soil management. In summary, Streptomyces dengpaensis is a microorganism of significant interest due to its potential in drug discovery, its complex metabolic capabilities, and its ecological importance. These characteristics make it a valuable organism for ongoing research in multiple scientific disciplines.

Streptomyces dengpaensis is a fascinating actinobacterium known for its remarkable ability to produce a diverse array of bioactive compounds, making it a valuable organism in pharmaceutical research. This species is part of the Streptomyces genus, which is renowned for its role in natural product biosynthesis, particularly antibiotics. What sets S. dengpaensis apart is its unique metabolic pathways that allow it to synthesize novel secondary metabolites, which have potential applications in medicine and agriculture. One of the most interesting aspects of S. dengpaensis is its ability to thrive in extreme environments, which often leads to the production of compounds with unique structures and activities. This adaptability not only enhances its survival but also increases the likelihood of discovering new bioactive molecules that could be harnessed for therapeutic purposes. Additionally, research on S. dengpaensis contributes to our understanding of microbial ecology and the interactions between soil-dwelling microorganisms. The ecological role of this organism in nutrient cycling and its potential in biocontrol strategies against plant pathogens highlight its importance beyond just antibiotic production. Overall, Streptomyces dengpaensis represents a promising avenue for biotechnological applications, particularly in drug discovery and sustainable agriculture, making it a subject of significant interest in microbiological and pharmaceutical research.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Kitasatosporales

Family: Streptomycetaceae

Genus: Streptomyces

Species: Streptomyces dengpaensis

NCBI ID

2049881

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/946/835/GCF_002946835.1_ASM294683v1

File for sequence-based predictions:
GCF_002946835.1_ASM294683v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Streptomyces dengpaensis is a member of the genus Streptomyces, which is known for its significant role in the production of antibiotics and other bioactive compounds. While specific clinical implications of Streptomyces dengpaensis are not extensively documented, its relatives have been associated with various beneficial and pathogenic properties. Antibiotic production is one of the most notable aspects, as members of this genus are known to produce over two-thirds of naturally occurring antibiotics, including streptomycin and tetracycline. This makes them crucial in the field of pharmaceutical microbiology and highlights their potential in developing new therapeutic agents against resistant pathogens. In terms of human health, some Streptomyces species have been explored for their role in probiotics, contributing to gut health and potentially modulating the immune response. However, the specific interactions of Streptomyces dengpaensis with the human microbiome remain to be fully elucidated. Regarding pathogenicity, while Streptomyces species are generally considered non-pathogenic, there are instances where they can be opportunistic pathogens, particularly in immunocompromised individuals. The potential for immune evasion strategies, such as the production of enzymes that degrade host tissues, has been noted in some related species, warranting further investigation into Streptomyces dengpaensis. Overall, while the direct clinical implications of Streptomyces dengpaensis are not well-established, its role in antibiotic production and potential applications in therapeutics and probiotics underscore its relevance in medical microbiology.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Streptomyces dengpaensis is a species of actinobacteria that is primarily found in soil ecosystems and is known for its significant role in the terrestrial biome. This microorganism thrives in nutrient-rich environments, particularly in areas with abundant organic matter, such as decaying plant material and compost. Its ability to degrade complex organic compounds makes it a vital player in the nutrient cycling process within these ecosystems. In addition to its ecological role, Streptomyces dengpaensis is notable for its interactions with other organisms. It often engages in symbiotic relationships with plants, promoting plant growth through the production of various bioactive compounds. These compounds can enhance nutrient availability and protect plants from pathogens, showcasing the organism's importance in agricultural biomes. Furthermore, Streptomyces dengpaensis is recognized for its ability to produce a variety of antibiotics and other secondary metabolites, which not only contribute to its survival in competitive environments but also play a crucial role in biocontrol strategies against plant diseases. This characteristic underscores its potential utility in sustainable agriculture and environmental management. Overall, the ecological niches occupied by Streptomyces dengpaensis highlight its adaptability and significance in maintaining the health and balance of soil ecosystems, making it an essential component of the terrestrial biome.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Streptomyces dengpaensis has shown significant potential in various industrial applications. One of the most notable areas is in biotechnology, where it is recognized for its ability to produce a range of bioactive compounds, including antibiotics and enzymes. These compounds are crucial in the development of pharmaceuticals, particularly in the fight against antibiotic-resistant bacteria. The fermentation process utilized by Streptomyces dengpaensis allows for the efficient production of these valuable metabolites, making it a key player in the pharmaceutical industry. In addition to its pharmaceutical applications, Streptomyces dengpaensis is also involved in waste management. Its capacity for biodegradation enables it to break down complex organic materials, which can be particularly useful in the treatment of agricultural and industrial waste. This biodegradation process not only helps in reducing waste volume but also in recycling nutrients back into the ecosystem. Furthermore, the enzymatic activity of Streptomyces dengpaensis has implications in biofuel production. The enzymes produced by this microorganism can facilitate the breakdown of lignocellulosic biomass, which is a critical step in the conversion of plant materials into biofuels. This process enhances the efficiency of biofuel production, making it a more viable alternative energy source. Overall, Streptomyces dengpaensis demonstrates a multifaceted role in biotechnology, waste management, and biofuel production, showcasing its importance in sustainable industrial practices.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	google/gemini-flash-1.5	google/palm-2-chat-bison-32k	meta-llama/llama-3-8b-instruct:nitro	google/gemini-pro-1.5	google/gemma-7b-it	mistralai/mistral-7b-instruct	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	anthropic/claude-3-haiku:beta	google/gemini-pro	google/gemini-pro	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-4o	openai/gpt-4o	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	FALSE	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain variable ✗	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	aerotolerant ✗	aerobic ✓	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	false	false	false	true	false	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 3 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	false	true	false	true	true	false	true	false	true	true	true	true	true	false	false	true	true	true	true	true	true	false	false	true	true	true	true
Host association	N/A	true	false	false	false	false	true	true	false	false	false	false	true	true	false	false	false	false	true	true	false	false	true	true	true	true	true	true
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Spore formation	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Hemolysis	N/A	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	tail	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗

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