Gordonia terrae

General Information

Gordonia terrae is a fascinating microorganism that belongs to the genus Gordonia. This bacterium is particularly interesting due to its ability to degrade a wide range of complex organic compounds, making it valuable for bioremediation efforts. Gordonia terrae has been studied for its potential to break down pollutants such as hydrocarbons, which are common environmental contaminants. This capability is attributed to its diverse metabolic pathways and enzymatic systems that can process various substrates. Another unique aspect of Gordonia terrae is its role in the biotransformation of steroids. This bacterium can modify steroid compounds, which has significant implications for pharmaceutical industries, particularly in the production of steroid-based drugs. The ability to transform steroids also highlights the organism's versatile metabolic capabilities. From a research perspective, Gordonia terrae is valuable for its genetic and biochemical diversity. Studies on this bacterium can provide insights into the mechanisms of biodegradation and biotransformation, contributing to the development of new biotechnological applications. Additionally, its resilience in diverse environmental conditions makes it a model organism for studying microbial adaptation and survival. Overall, Gordonia terrae stands out due to its environmental and industrial applications, making it a subject of ongoing scientific interest and research.

Gordonia terrae is a fascinating actinobacterial species known for its remarkable ability to degrade a variety of complex organic compounds, including those found in environmental pollutants. This characteristic makes it particularly valuable in bioremediation efforts, where it can be employed to clean up contaminated sites, especially those affected by petroleum hydrocarbons and other xenobiotic compounds. The metabolic versatility of Gordonia terrae allows it to thrive in diverse environments, including soil and aquatic systems, where it plays a crucial role in nutrient cycling. One of the unique features of Gordonia terrae is its ability to produce a range of extracellular enzymes, which facilitate the breakdown of complex substrates. This enzymatic activity not only contributes to its survival in challenging environments but also positions it as a potential source for industrial enzyme applications. Research into these enzymes could lead to advancements in biotechnology, particularly in the fields of waste management and biofuel production. Additionally, Gordonia terrae has garnered interest due to its unique lipid composition, which includes mycolic acids. These lipids are significant for their role in the organism's cell wall structure and have implications for understanding the evolutionary relationships within the actinobacteria. The study of Gordonia terrae can provide insights into the mechanisms of lipid biosynthesis and its adaptations to environmental stresses. Overall, Gordonia terrae stands out not only for its ecological importance but also for its potential applications in environmental science and biotechnology, making it a subject of ongoing research and interest in microbial ecology.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Mycobacteriales

Family: Gordoniaceae

Genus: Gordonia

Species: Gordonia terrae

NCBI ID

2055

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/003/183/825/GCF_003183825.1_ASM318382v1

File for sequence-based predictions:
GCF_003183825.1_ASM318382v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Gordonia terrae is a member of the Actinobacteria phylum and has garnered attention due to its clinical implications in human health. It is primarily known for its role as an opportunistic pathogen, particularly in immunocompromised individuals. Infections caused by Gordonia terrae can lead to pulmonary infections, skin infections, and soft tissue infections, often complicating the clinical picture in patients with underlying health conditions. One of the notable aspects of Gordonia terrae is its antimicrobial resistance. This organism has demonstrated resistance to multiple antibiotics, including beta-lactams and macrolides, which poses significant challenges in treatment. The presence of such resistance mechanisms necessitates careful selection of antimicrobial therapy and highlights the importance of susceptibility testing in clinical settings. In terms of immune evasion strategies, Gordonia terrae can survive within macrophages, allowing it to evade the host's immune response. This ability to persist in host tissues contributes to its pathogenic potential and complicates the management of infections. While Gordonia terrae is primarily recognized for its pathogenicity, it is also studied for potential medical applications. Some strains have been explored for their ability to produce bioactive compounds, which may have therapeutic uses. However, the clinical relevance of these applications remains under investigation. Overall, the clinical implications of Gordonia terrae underscore the need for heightened awareness among healthcare providers regarding its potential to cause infections, particularly in vulnerable populations, and the importance of monitoring for antimicrobial resistance in clinical isolates.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Gordonia terrae is a species of actinobacteria that is primarily associated with soil environments and wastewater treatment systems. This microorganism thrives in nutrient-rich habitats, often found in areas where organic matter is abundant, such as decaying plant material and compost. Its ability to degrade complex organic compounds, particularly polycyclic aromatic hydrocarbons (PAHs), makes it a significant player in bioremediation processes, helping to clean up contaminated environments. In terms of ecological interactions, Gordonia terrae exhibits symbiotic relationships with various soil microorganisms, contributing to nutrient cycling and enhancing soil fertility. It can also form biofilms, which are essential for its survival in aerobic and anaerobic conditions, allowing it to adapt to fluctuating environmental conditions. This adaptability underscores its role in ecosystem resilience, particularly in disturbed habitats. Overall, Gordonia terrae is a vital component of terrestrial biomes, particularly in temperate and tropical regions, where it plays a crucial role in maintaining ecological balance through its degradation capabilities and interactions with other soil organisms.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Gordonia terrae has shown significant potential in various industrial applications due to its unique metabolic capabilities. One of the most notable areas is in biotechnology, where Gordonia terrae is utilized for its ability to degrade complex organic compounds, making it valuable in biodegradation processes. This characteristic allows it to be employed in the treatment of contaminated environments, particularly in the breakdown of pollutants such as polycyclic aromatic hydrocarbons (PAHs) and other recalcitrant compounds. In the realm of waste management, Gordonia terrae has been studied for its effectiveness in bioremediation efforts, where it can help in the detoxification of hazardous waste sites. Its capacity to metabolize various xenobiotic compounds positions it as a key player in cleaning up oil spills and other environmental contaminants. Furthermore, Gordonia terrae has been explored for its role in biofuel production. The organism can participate in fermentation processes that convert biomass into biofuels, particularly through the breakdown of lignocellulosic materials. This capability not only aids in sustainable energy production but also contributes to reducing waste. In the pharmaceutical development sector, Gordonia terrae has been investigated for its potential to produce valuable secondary metabolites, which could lead to the discovery of new drugs or therapeutic agents. Its enzymatic activity is of particular interest, as it may facilitate the synthesis of complex organic molecules that are difficult to produce through traditional chemical methods. Overall, Gordonia terrae exemplifies a versatile microorganism with promising applications across multiple industries, particularly in biodegradation, bioremediation, fermentation, and enzyme production, making it a valuable asset in the pursuit of sustainable industrial practices.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 11

LLM predicted phenotypes: 2

Phenotype	High-quality annotation	google/gemini-flash-1.5	google/gemini-pro	meta-llama/llama-3-70b-instruct:nitro	google/palm-2-chat-bison-32k	anthropic/claude-3.5-sonnet	perplexity/llama-3-sonar-small-32k-chat	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct	google/gemma-7b-it	google/gemma-7b-it	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	openchat/openchat-7b	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	anthropic/claude-3-haiku:beta	anthropic/claude-3-haiku:beta
Motility	FALSE	false ✓	false ✓	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain variable ✗	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain negative ✗	N/A	gram stain positive ✓
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	aerobic ✓	aerobic ✓	aerotolerant ✗	aerotolerant ✗	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biosafety level	biosafety level 2	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓
Health association	N/A	true	true	true	true	true	true	false	false	false	false	false	false	true	true	true	true	false	false	false	false	true	true	true	true	true	true	false	false	true	true
Host association	FALSE	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	gamma	gamma ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗	coccus ✗	coccus ✗	bacillus ✓	bacillus ✓

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