Chimaeribacter californicus

General Information

Chimaeribacter californicus is a fascinating microorganism that has garnered attention due to its unique phylogenetic placement and potential biotechnological applications. This bacterium was first isolated from soil in California, which is reflected in its species name. One of the most intriguing aspects of C. californicus is its distinctive genetic makeup, which places it in a novel genus within the family Cyclobacteriaceae. This unique phylogenetic position suggests that C. californicus could possess unexplored metabolic pathways and novel biochemical capabilities. From a research perspective, C. californicus is particularly valuable due to its potential role in bioremediation. Preliminary studies indicate that this bacterium may be capable of degrading various environmental pollutants, making it a candidate for cleaning up contaminated sites. Additionally, its ability to thrive in diverse soil environments suggests that it could be robust and adaptable, traits that are highly desirable in bioremediation agents. Another noteworthy characteristic of C. californicus is its production of secondary metabolites. These compounds, which are not directly involved in the normal growth, development, or reproduction of the organism, often have antimicrobial properties. This makes C. californicus a potential source of new antibiotics, which is particularly important in the face of rising antibiotic resistance. In summary, Chimaeribacter californicus stands out due to its unique genetic characteristics, potential applications in bioremediation, and the production of bioactive secondary metabolites. These features make it a promising subject for further research and biotechnological exploitation.

Chimaeribacter californicus is a fascinating bacterium that was first isolated from marine environments, specifically from the coastal waters of California. This organism is particularly interesting due to its unique ecological niche and its role in the marine ecosystem. It is known for its ability to degrade complex organic compounds, which makes it valuable for bioremediation efforts in polluted marine environments. The metabolic pathways utilized by C. californicus are still being studied, but they are believed to involve the breakdown of various hydrocarbons, contributing to the cycling of nutrients in marine ecosystems. Another remarkable aspect of Chimaeribacter californicus is its potential applications in biotechnology. Researchers are exploring its enzymatic capabilities, which may lead to the development of novel biocatalysts for industrial processes. The organism's adaptability to varying environmental conditions also makes it a subject of interest in studies related to climate change and its impact on marine microbial communities. Furthermore, C. californicus has been noted for its unique phylogenetic position within the bacterial domain, which raises questions about evolutionary relationships among marine bacteria. This aspect makes it a valuable organism for studies in microbial evolution and diversity. Overall, Chimaeribacter californicus stands out not only for its ecological significance but also for its potential contributions to environmental science and biotechnology.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Enterobacterales

Family: Yersiniaceae

Genus: Chimaeribacter

Species: Chimaeribacter californicus

NCBI ID

2060067

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/858/675/GCF_002858675.1_ASM285867v1

File for sequence-based predictions:
GCF_002858675.1_ASM285867v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Chimaeribacter californicus is a relatively newly identified bacterium that has been associated with various ecological niches, particularly in marine environments. While its direct clinical implications in human health are not extensively documented, it is important to note that its presence in aquatic ecosystems may indicate potential pathogenic risks, especially in immunocompromised individuals. The organism's role in biofilm formation and its interactions with other microbial communities could suggest a potential for infections in specific contexts, particularly in cases of exposure to contaminated water sources. Furthermore, the study of Chimaeribacter californicus may provide insights into antimicrobial resistance mechanisms, as it is part of a broader group of bacteria that can exhibit resistance traits. Understanding its ecological role and potential pathogenicity is crucial for assessing risks associated with marine environments and for developing strategies to mitigate any health impacts. However, as of now, there are no well-documented outbreaks or specific diseases directly linked to Chimaeribacter californicus, and further research is needed to clarify its clinical relevance.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Chimaeribacter californicus is a unique microorganism primarily associated with marine environments, particularly in the coastal waters of California. This bacterium thrives in temperate marine ecosystems, where it plays a significant role in the degradation of organic matter. Its presence is often linked to benthic zones, where it contributes to nutrient cycling and the breakdown of complex organic compounds, thus supporting the overall health of the marine ecosystem. In these coastal habitats, Chimaeribacter californicus interacts with various other microorganisms, forming a part of the microbial community that is essential for maintaining the balance of the ecosystem. It is known to engage in symbiotic relationships with other marine organisms, aiding in the digestion of organic materials and enhancing nutrient availability. Furthermore, this bacterium exhibits remarkable environmental adaptations, allowing it to thrive in varying conditions such as changes in salinity and temperature. Its metabolic versatility enables it to utilize a range of substrates, making it a key player in the biogeochemical cycles of coastal waters. Overall, Chimaeribacter californicus is an important component of the marine biome, contributing to the ecological dynamics and health of its environment.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Chimaeribacter californicus has shown potential in various industrial applications, particularly in the fields of biotechnology and waste management. This organism is known for its ability to thrive in extreme environments, which can be harnessed for specific industrial processes. In biotechnology, Chimaeribacter californicus can be utilized in fermentation processes to produce valuable metabolites. Its unique metabolic pathways allow for the conversion of complex substrates into simpler compounds, which can be further processed into bioactive products. This capability is particularly useful in the production of biofuels, where the organism can help in the breakdown of lignocellulosic biomass, enhancing the efficiency of bioethanol production. In the realm of waste management, Chimaeribacter californicus has demonstrated effective biodegradation capabilities. It can break down various pollutants, including hydrocarbons and other organic waste, making it a candidate for bioremediation efforts in contaminated environments. This process not only helps in cleaning up waste but also contributes to the recycling of nutrients back into the ecosystem. Furthermore, the enzymatic activity of Chimaeribacter californicus can be harnessed for enzyme production, which is crucial in various industries, including food processing and pharmaceuticals. The enzymes produced by this microorganism can facilitate reactions that are essential for the synthesis of drugs or the processing of food products, thereby enhancing efficiency and reducing costs. Overall, Chimaeribacter californicus presents a promising avenue for innovation in pharmaceutical development, biofuel production, and environmental sustainability, making it a valuable organism in the industrial microbiology landscape.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	mistralai/mixtral-8x7b-instruct:nitro	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	anthropic/claude-3-haiku:beta	google/gemini-pro	meta-llama/llama-3-8b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	google/gemma-7b-it	google/gemma-7b-it	google/gemini-flash-1.5	google/gemini-flash-1.5	openai/gpt-4	openai/gpt-4	openai/gpt-4o	openai/gpt-4o	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	TRUE	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain variable ✗
Aerophilicity	N/A	facultatively anaerobic	aerobic	aerobic	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	anaerobic	anaerobic	aerobic	aerobic	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	false	true	true	true	true	true	false	true	true	true	true	false	false	true	true	false	false	true	true	true	true	true	true	true	true	false	false
Animal pathogenicity	TRUE	false ✗	false ✗	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	false	true	false	true	true	true	true	false	true	true	true	true	false	false	false	false	false	false	false	false	false	false	true	true	false	false	false	false
Host association	TRUE	false ✗	false ✗	false ✗	true ✓	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓
Plant pathogenicity	TRUE	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	N/A	beta	N/A	N/A	N/A	N/A	alpha	alpha	beta	beta	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗

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