Chimaeribacter coloradensis

General Information

Chimaeribacter coloradensis is a fascinating microorganism that has garnered attention due to its unique phylogenetic placement and ecological niche. This bacterium was first isolated from a soil sample collected in Colorado, USA, which contributes to its name. One of the most intriguing aspects of C. coloradensis is its distinctive genetic makeup, which sets it apart from other members of the family Chitinophagaceae. The genome of C. coloradensis reveals a wealth of genes associated with the degradation of complex polysaccharides, making it a valuable organism for studies on biodegradation and carbon cycling. This capability suggests potential applications in environmental biotechnology, particularly in the breakdown of agricultural waste and other organic materials. Another notable feature of C. coloradensis is its production of unique secondary metabolites. These compounds have shown antimicrobial properties, which could be harnessed for the development of new antibiotics or antifungal agents. The study of these metabolites also provides insights into the chemical ecology of soil microorganisms and their interactions with other microbial communities. In summary, Chimaeribacter coloradensis stands out due to its genetic distinctiveness, biodegradation potential, and production of bioactive compounds. These characteristics make it a valuable subject for research in microbial ecology, environmental biotechnology, and natural product discovery.

Chimaeribacter coloradensis is a fascinating bacterium that was first isolated from a freshwater environment in Colorado. This organism is particularly interesting due to its unique ecological niche and its potential applications in biotechnology and environmental science. One of the standout features of C. coloradensis is its ability to degrade complex organic compounds, which makes it a valuable candidate for bioremediation efforts, especially in polluted aquatic systems. The bacterium is also notable for its metabolic versatility, allowing it to thrive in various environmental conditions. This adaptability not only contributes to its survival in diverse habitats but also enhances its potential for use in industrial processes, such as waste treatment and bioenergy production. Furthermore, C. coloradensis has been the subject of research aimed at understanding microbial interactions within its ecosystem. Studying this organism can provide insights into microbial community dynamics and the role of bacteria in nutrient cycling. Its unique genetic and metabolic pathways are of particular interest to researchers exploring microbial ecology and evolutionary biology. Overall, Chimaeribacter coloradensis represents a promising area of study for both environmental applications and fundamental microbiological research.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Enterobacterales

Family: Yersiniaceae

Genus: Chimaeribacter

Species: Chimaeribacter coloradensis

NCBI ID

2060068

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/858/715/GCF_002858715.1_ASM285871v1

File for sequence-based predictions:
GCF_002858715.1_ASM285871v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Chimaeribacter coloradensis is a relatively newly identified bacterium that has been associated with specific clinical implications, particularly in the context of infections and immune response mechanisms. This organism is primarily known for its role in the gastrointestinal tract, where it may influence gut health and microbiome balance. While research is still ongoing, there are indications that Chimaeribacter coloradensis could be involved in dysbiosis, which is linked to various gastrointestinal disorders, including inflammatory bowel disease (IBD) and irritable bowel syndrome (IBS). One of the notable aspects of Chimaeribacter coloradensis is its potential pathogenicity, although it is not classified as a primary pathogen. Its presence in certain clinical samples has raised questions about its role in opportunistic infections, particularly in immunocompromised patients. The organism's ability to evade the immune response may contribute to its persistence in the gut microbiome, leading to further investigations into its interactions with host immune cells. In terms of antimicrobial resistance, there is limited data available, but like many gut bacteria, it may possess mechanisms that allow it to survive in the presence of antibiotics. This raises concerns about the implications for treatment strategies in patients with gut-related diseases. Currently, there are no established medical applications such as probiotics or vaccines specifically targeting Chimaeribacter coloradensis. However, understanding its role in the gut microbiome could pave the way for future therapeutic approaches aimed at restoring microbial balance and improving gut health. Further research is essential to fully elucidate the clinical significance of this organism and its potential impact on human health.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Chimaeribacter coloradensis is a unique microorganism primarily associated with freshwater environments, particularly in the high-altitude lakes and streams of the Rocky Mountains. This bacterium thrives in oligotrophic conditions, where nutrient levels are low, and it plays a crucial role in the cycling of organic matter within these ecosystems. In its natural habitat, Chimaeribacter coloradensis is often found in association with biofilms on submerged surfaces, where it contributes to the breakdown of complex organic compounds. This process is essential for maintaining the health of the aquatic ecosystem, as it helps to recycle nutrients and supports the growth of other microorganisms and aquatic life. Notably, this bacterium exhibits a symbiotic relationship with various aquatic organisms, including certain algae and protozoa, enhancing nutrient availability and promoting biodiversity within its habitat. Its ability to adapt to the specific conditions of high-altitude freshwater systems, such as low temperatures and varying oxygen levels, underscores its ecological significance. Overall, Chimaeribacter coloradensis is a vital component of its biome, influencing both the microbial community dynamics and the overall health of the freshwater ecosystems it inhabits.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Chimaeribacter coloradensis has shown potential in various industrial applications, particularly in the fields of biotechnology, waste management, and biofuel production. This organism is known for its ability to thrive in extreme environments, which can be harnessed for specific industrial processes. In biotechnology, Chimaeribacter coloradensis can be utilized in fermentation processes to produce valuable metabolites. Its unique metabolic pathways allow for the conversion of substrates into bioactive compounds, which can be used in food and pharmaceutical industries. In the realm of waste management, this microorganism has demonstrated capabilities in biodegradation, particularly in breaking down complex organic materials. This property can be leveraged in the treatment of wastewater and the remediation of contaminated sites, making it a valuable asset in environmental biotechnology. Furthermore, Chimaeribacter coloradensis has potential applications in biofuel production. Its metabolic processes can be optimized to enhance the yield of biofuels through fermentation of biomass, contributing to sustainable energy solutions. Overall, the versatility of Chimaeribacter coloradensis in these industrial applications highlights its importance in advancing technologies that promote environmental sustainability and resource efficiency.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	google/gemini-flash-1.5	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	anthropic/claude-3-haiku:beta	meta-llama/llama-3-70b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-4o	openai/gpt-4o	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	google/gemini-pro	google/gemini-pro	google/gemma-7b-it	google/gemma-7b-it	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain positive ✗	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	N/A	N/A	aerobic	aerobic	N/A	N/A	N/A	N/A	N/A	aerotolerant	aerotolerant	facultatively anaerobic	facultatively anaerobic	anaerobic	anaerobic	aerobic	aerobic	aerobic	aerobic	facultatively anaerobic	facultatively anaerobic	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗
Biofilm formation	N/A	true	false	true	true	true	true	true	false	false	false	true	true	false	false	true	true	true	true	false	false	true	true	true	true	true	true	true	true
Animal pathogenicity	TRUE	true ✓	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗
Biosafety level	biosafety level 1	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	false	true	true	false	true	false	false	false	false	false	false	false	true	true	false	false	false	false	true	true	true	true	true	true	true	true
Host association	TRUE	true ✓	false ✗	false ✗	true ✓	true ✓	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓
Plant pathogenicity	TRUE	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	beta	N/A	N/A	beta	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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