Achromobacter veterisilvae

General Information

Achromobacter veterisilvae is a fascinating microorganism that has garnered attention due to its unique ecological niche and potential applications in biotechnology. This bacterium was originally isolated from forest soil, which suggests it plays a role in the complex microbial ecosystems of terrestrial environments. One of the key characteristics of A. veterisilvae is its ability to degrade a variety of organic compounds, making it a candidate for bioremediation efforts. This capability is particularly valuable in the context of environmental pollution, where the bacterium could be employed to break down harmful substances in contaminated soils. Additionally, Achromobacter veterisilvae has shown potential in the field of biocontrol. Its presence in soil can inhibit the growth of certain plant pathogens, thereby promoting healthier plant growth and reducing the need for chemical pesticides. This makes it an organism of interest for sustainable agriculture practices. From a research perspective, the genetic and metabolic pathways of A. veterisilvae are of significant interest. Understanding these pathways can provide insights into how this bacterium adapts to its environment and interacts with other microorganisms. This knowledge could lead to the development of new biotechnological applications, such as the synthesis of novel bioactive compounds. In summary, Achromobacter veterisilvae is a microorganism with remarkable potential in environmental and agricultural biotechnology. Its ability to degrade pollutants and act as a biocontrol agent highlights its importance in both natural ecosystems and human-engineered solutions.

Achromobacter veterisilvae is a fascinating bacterium that has garnered attention due to its unique ecological niche and potential applications in biotechnology. This species is primarily isolated from environmental sources, particularly in soil and water, which highlights its role in the natural ecosystem. One of the most interesting aspects of A. veterisilvae is its ability to degrade various organic compounds, making it a valuable organism for bioremediation efforts. Its metabolic versatility allows it to utilize a range of substrates, which can be harnessed for the breakdown of pollutants in contaminated environments. Furthermore, A. veterisilvae has been studied for its potential in the production of bioplastics and other biodegradable materials. This characteristic positions it as a promising candidate in the search for sustainable alternatives to conventional plastics, contributing to environmental conservation efforts. The organism's genetic and metabolic pathways are of particular interest to researchers aiming to enhance its capabilities through genetic engineering. In addition to its biotechnological applications, A. veterisilvae has been noted for its interactions with other microorganisms in its habitat. Understanding these interactions can provide insights into microbial ecology and the dynamics of microbial communities, which are crucial for maintaining ecosystem health. Overall, Achromobacter veterisilvae stands out as a microbe with significant potential for both environmental and industrial applications, making it a subject of ongoing research and interest in the field of microbiology.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Betaproteobacteria

Order: Burkholderiales

Family: Alcaligenaceae

Genus: Achromobacter

Species: Achromobacter veterisilvae

NCBI ID

2069367

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/037/619/525/GCF_037619525.1_ASM3761952v1

File for sequence-based predictions:
GCF_037619525.1_ASM3761952v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Achromobacter veterisilvae is a Gram-negative bacterium that has been increasingly recognized in clinical settings, particularly in patients with compromised immune systems. Clinical implications of A. veterisilvae include its association with nosocomial infections, particularly in patients with underlying conditions such as cystic fibrosis or those undergoing invasive procedures. This organism has been isolated from various clinical specimens, including respiratory secretions, blood, and wounds, indicating its potential pathogenicity. One of the significant concerns regarding A. veterisilvae is its antimicrobial resistance profile. It has shown resistance to multiple classes of antibiotics, which complicates treatment options for infections. The mechanisms of resistance may involve the production of beta-lactamases and efflux pumps, which can lead to treatment failures and prolonged hospital stays. In terms of immune evasion, A. veterisilvae can form biofilms, particularly in the lungs of cystic fibrosis patients, which protects it from both the host immune response and antibiotic treatment. This biofilm formation is a critical factor in its pathogenicity and contributes to chronic infections. While A. veterisilvae is primarily recognized for its role in infections, there is ongoing research into its potential medical applications. Some studies suggest that certain strains may have probiotic properties, although this is not yet well-established in clinical practice. Overall, the clinical relevance of Achromobacter veterisilvae underscores the need for continued surveillance and research to better understand its role in human health and disease.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Achromobacter veterisilvae is a bacterium commonly associated with various soil environments and aquatic ecosystems. This microorganism thrives in nutrient-rich soils and is often found in areas with high organic matter content, such as decaying plant material and compost. Its ability to degrade complex organic compounds makes it an important player in the nutrient cycling process, contributing to soil fertility and health. In aquatic habitats, A. veterisilvae can be found in freshwater systems, where it plays a role in the breakdown of organic pollutants, thus aiding in bioremediation efforts. This bacterium exhibits a notable ability to adapt to varying environmental conditions, including changes in pH and temperature, which allows it to thrive in diverse habitats. Furthermore, A. veterisilvae has been documented to engage in symbiotic relationships with certain plants, enhancing their nutrient uptake and promoting plant growth. This interaction underscores its significance in terrestrial ecosystems, where it contributes to the overall health and stability of the biome. Overall, Achromobacter veterisilvae is a versatile microorganism that plays a crucial role in maintaining the balance of ecosystem functions across its various habitats.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Achromobacter veterisilvae has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where it is utilized for its ability to produce enzymes that can be harnessed in various biochemical processes. For instance, the organism is known for its enzyme production, which can be applied in the food industry for improving the texture and flavor of products through enzymatic reactions. In the realm of waste management, Achromobacter veterisilvae has demonstrated capabilities in biodegradation, particularly in the breakdown of pollutants and organic waste materials. This makes it a valuable asset in bioremediation efforts, where it can help in the detoxification of contaminated environments, such as oil spills or heavy metal-laden sites. Furthermore, the organism has potential applications in biofuel production. Its metabolic pathways can be exploited in fermentation processes to convert organic substrates into biofuels, such as ethanol or biodiesel, thereby contributing to sustainable energy solutions. In pharmaceutical development, Achromobacter veterisilvae may play a role in the production of bioactive compounds that can be used in drug formulation. Its unique metabolic capabilities allow for the synthesis of various secondary metabolites that could have therapeutic properties. Overall, the versatility of Achromobacter veterisilvae in these industrial sectors highlights its importance as a microorganism with promising applications in biotechnology, waste management, biofuel production, and pharmaceutical development.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	anthropic/claude-3-haiku:beta	google/gemini-flash-1.5	google/gemma-7b-it	mistralai/mixtral-8x7b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	mistralai/mistral-7b-instruct	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/gemini-pro-1.5	google/gemini-pro-1.5	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-4o	openai/gpt-4o	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	google/gemini-pro	google/gemini-pro
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain variable ✗	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	N/A	N/A	N/A	facultatively anaerobic ✗	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	true	true	true	true	false	false	false	false	false	false	true	true	false	false	true	true	false	false	false	false	false	false	false	false	false	false	true	true
Biosafety level	N/A	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 2	biosafety level 2	biosafety level 1	biosafety level 1	biosafety level 2	biosafety level 2	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 2	biosafety level 2	biosafety level 1	biosafety level 1	biosafety level 2	biosafety level 2
Health association	N/A	true	true	true	true	true	true	true	false	false	false	true	true	false	false	true	true	true	true	false	false	true	true	false	false	false	false	true	true
Host association	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	gamma	N/A	alpha ✗	gamma ✓	alpha ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗	bacillus ✓	bacillus ✓

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