Paraburkholderia agricolaris

General Information

Paraburkholderia agricolaris is a fascinating microorganism that belongs to the genus Paraburkholderia, which is known for its diverse metabolic capabilities and ecological roles. One of the most intriguing aspects of P. agricolaris is its ability to promote plant growth. This characteristic makes it particularly valuable in agricultural research and applications, as it can potentially be used as a biofertilizer to enhance crop yields and reduce the need for chemical fertilizers. Another notable feature of P. agricolaris is its capacity for nitrogen fixation. This process allows the bacterium to convert atmospheric nitrogen into a form that plants can readily absorb and utilize, further contributing to soil fertility and plant health. This trait is especially important in sustainable agriculture practices, where maintaining soil health and reducing environmental impact are key goals. P. agricolaris also exhibits a remarkable ability to degrade various organic compounds, including some pollutants. This makes it a candidate for bioremediation efforts, where it can be employed to clean up contaminated environments. Its metabolic versatility allows it to thrive in diverse habitats, from soil to water, making it a robust organism for environmental applications. In addition to its practical applications, P. agricolaris is of significant interest in microbial ecology and evolutionary studies. The genus Paraburkholderia has undergone extensive taxonomic revisions, and studying P. agricolaris can provide insights into the evolutionary relationships and genetic diversity within this group of bacteria. Overall, Paraburkholderia agricolaris stands out due to its plant growth-promoting properties, nitrogen-fixing ability, and potential for bioremediation, making it a valuable organism for both applied and fundamental research.

Paraburkholderia agricolaris is a fascinating bacterium primarily known for its role in the rhizosphere of various plants. This organism is particularly interesting due to its ability to promote plant growth through mechanisms such as nitrogen fixation and the production of plant growth-promoting substances. Its presence in agricultural soils can enhance nutrient availability, making it a valuable ally in sustainable farming practices. One of the unique aspects of P. agricolaris is its adaptability to diverse environmental conditions, which allows it to thrive in various soil types and climates. This adaptability is crucial for its application in bioremediation, where it can help in the degradation of pollutants in contaminated soils, thus contributing to environmental health. Additionally, P. agricolaris has been studied for its potential in biocontrol, as it can suppress certain plant pathogens, thereby reducing the need for chemical pesticides. This characteristic not only supports plant health but also aligns with the growing demand for eco-friendly agricultural practices. The genomic studies of P. agricolaris have revealed a rich repertoire of genes associated with metabolic versatility, enabling it to utilize a wide range of organic compounds. This metabolic flexibility is a key area of research, as it opens avenues for exploring its applications in biotechnology, particularly in the development of biofertilizers and biopesticides. In summary, Paraburkholderia agricolaris stands out as a valuable microorganism in agriculture and environmental science, with its multifaceted roles in promoting plant health, enhancing soil quality, and contributing to sustainable agricultural practices.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Betaproteobacteria

Order: Burkholderiales

Family: Burkholderiaceae

Genus: Paraburkholderia

Species: Paraburkholderia agricolaris

NCBI ID

2152888

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/455/635/GCF_009455635.1_ASM945563v1

File for sequence-based predictions:
GCF_009455635.1_ASM945563v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Paraburkholderia agricolaris is a member of the Burkholderia genus, which is known for its diverse ecological roles and potential clinical implications. While primarily recognized for its presence in agricultural environments, P. agricolaris has been associated with various infections in immunocompromised individuals. Clinical relevance arises from its potential pathogenicity, particularly in patients with underlying health conditions, where it can lead to opportunistic infections. This microorganism exhibits antimicrobial resistance, which poses challenges in treatment options. Resistance mechanisms may include the production of beta-lactamases and efflux pumps, complicating the management of infections caused by this organism. In terms of immune evasion, P. agricolaris can manipulate host immune responses, allowing it to persist in the host and evade detection. This characteristic is particularly concerning in clinical settings, where it can contribute to chronic infections. While research on P. agricolaris is still emerging, its role in disease associations and potential as a pathogen in specific populations underscores the need for further investigation into its clinical implications. Understanding its interactions with the human body and the environment is crucial for developing effective therapeutic strategies and managing potential outbreaks.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Paraburkholderia agricolaris is primarily associated with agricultural ecosystems, particularly in soil environments where it plays a significant role in nutrient cycling and plant health. This microorganism is often found in the rhizosphere, the region of soil directly influenced by root secretions and associated soil microorganisms. Here, it engages in mutualistic relationships with various plants, enhancing nutrient uptake, particularly nitrogen, through its ability to fix atmospheric nitrogen. This interaction is crucial for promoting plant growth and improving soil fertility, making it an essential component of sustainable agricultural practices. In addition to its role in the rhizosphere, Paraburkholderia agricolaris can also thrive in wetland habitats, where it contributes to the degradation of organic matter and the cycling of nutrients in these biodiverse ecosystems. Its adaptability to varying moisture levels and soil types allows it to occupy a range of ecological niches, from flooded fields to drained agricultural lands. Furthermore, this microorganism exhibits notable environmental adaptations, enabling it to withstand fluctuations in temperature and pH levels, which are common in agricultural settings. Its presence in these biomes not only supports plant health but also contributes to the overall resilience of the ecosystem, making it a vital player in maintaining ecological balance and promoting biodiversity.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Paraburkholderia agricolaris has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where P. agricolaris is utilized for its ability to enhance plant growth through biological nitrogen fixation. This process not only improves soil fertility but also reduces the need for chemical fertilizers, promoting sustainable agricultural practices. In the realm of waste management, P. agricolaris has demonstrated capabilities in biodegradation, particularly in the breakdown of complex organic compounds found in agricultural waste. This property is crucial for developing eco-friendly waste treatment solutions that minimize environmental impact. Furthermore, P. agricolaris is being explored for its role in biofuel production. The organism can participate in fermentation processes that convert biomass into bioethanol, providing a renewable energy source that can help reduce reliance on fossil fuels. In pharmaceutical development, the metabolic pathways of P. agricolaris are of interest for the production of bioactive compounds. These compounds can serve as precursors for drugs or as agents with antimicrobial properties, showcasing the organism's versatility in the pharmaceutical industry. Overall, Paraburkholderia agricolaris represents a valuable resource in various sectors, contributing to sustainable practices and innovative solutions in biotechnology, waste management, biofuel production, and pharmaceuticals.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	anthropic/claude-3-haiku:beta	meta-llama/llama-3-70b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	google/gemma-7b-it	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	mistralai/mistral-7b-instruct	google/gemini-pro-1.5	google/gemini-pro-1.5	google/gemini-flash-1.5	google/gemini-flash-1.5	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	openai/gpt-4	openai/gpt-4	google/gemini-pro	google/gemini-pro
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	N/A	N/A	aerobic ✓	aerobic ✓	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	false ✓	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true
Host association	N/A	false	true	false	false	true	true	false	false	false	true	false	false	true	true	false	false	true	true	false	false	false	false	false	false	false	false
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	gamma ✓	gamma ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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