Photobacterium andalusiense

General Information

Photobacterium andalusiense is a fascinating marine bacterium that has garnered attention for its unique bioluminescent properties. This microorganism is part of the Photobacterium genus, which is well-known for its ability to produce light through a biochemical process involving the enzyme luciferase. Bioluminescence in P. andalusiense is not just a visually captivating phenomenon but also holds significant potential for various scientific and industrial applications. One of the most intriguing aspects of Photobacterium andalusiense is its ecological role in marine environments. The light produced by this bacterium can attract other marine organisms, playing a part in symbiotic relationships and influencing marine food webs. This makes it a valuable subject for ecological and environmental studies. From a biotechnological perspective, the bioluminescent system of P. andalusiense is of great interest. The luciferase enzyme and its associated biochemical pathways can be harnessed for biosensors and bioimaging applications. For instance, the bioluminescent properties can be used to develop sensitive assays for detecting various biological and chemical substances, making it a powerful tool in medical diagnostics and environmental monitoring. Moreover, the genetic and molecular mechanisms underlying bioluminescence in Photobacterium andalusiense provide a rich area for research. Understanding these mechanisms can lead to advancements in synthetic biology, where the bioluminescent genes can be engineered into other organisms or systems for innovative applications. In summary, Photobacterium andalusiense stands out due to its bioluminescent capabilities, ecological significance, and potential for biotechnological innovations. Its study not only enhances our understanding of marine microbiology but also opens up new avenues for practical applications in science and industry.

Photobacterium andalusiense is a fascinating marine bacterium that belongs to the family Vibrionaceae. This organism is particularly notable for its bioluminescent properties, which are a result of the presence of luciferase enzymes that facilitate light production. The ability to emit light not only serves ecological functions, such as attracting prey or deterring predators, but also makes P. andalusiense a valuable model organism for studying bioluminescence mechanisms and their applications in biotechnology. One of the unique aspects of P. andalusiense is its habitat; it is typically found in marine environments, particularly in association with fish and other marine organisms. This symbiotic relationship can provide insights into microbial ecology and the interactions between marine bacteria and their hosts. The study of P. andalusiense can also contribute to our understanding of the role of bioluminescent bacteria in marine ecosystems, including their impact on nutrient cycling and energy flow. Furthermore, the genetic and biochemical pathways involved in its bioluminescence are of significant interest for researchers looking to harness these processes for applications in environmental monitoring, medical diagnostics, and even in the development of novel bioluminescent markers for research purposes. The potential for P. andalusiense to be used in synthetic biology and genetic engineering makes it a valuable organism in the field of microbiology and biotechnology. In summary, Photobacterium andalusiense stands out due to its bioluminescent capabilities, ecological significance in marine environments, and its potential applications in various scientific fields, making it a subject of ongoing research and interest.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Vibrionales

Family: Vibrionaceae

Genus: Photobacterium

Species: Photobacterium andalusiense

NCBI ID

2204296

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/185/625/GCA_900185625.1_P.andalusiensis_CECT9192T_SPAdes_Prokka_EMBL

File for sequence-based predictions:
GCA_900185625.1_P.andalusiensis_CECT9192T_SPAdes_Prokka_EMBL_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Photobacterium andalusiense is a marine bacterium that has garnered attention due to its potential clinical implications, particularly in the context of infections associated with seafood consumption. It is known to produce bioluminescence and has been isolated from various marine environments, including fish and shellfish. While not traditionally classified as a human pathogen, there are instances where P. andalusiense has been implicated in foodborne illnesses, particularly in immunocompromised individuals. Clinical relevance arises from its ability to cause gastroenteritis and other gastrointestinal symptoms when contaminated seafood is ingested. Furthermore, the organism's role in antimicrobial resistance is an area of growing concern, as it may harbor resistance genes that could be transferred to other pathogenic bacteria. This potential for horizontal gene transfer raises alarms about the implications for public health, especially in regions where seafood consumption is high. In terms of immune evasion strategies, P. andalusiense may utilize its bioluminescent properties to evade detection by the host's immune system, although specific mechanisms remain to be fully elucidated. While there are no established medical applications such as probiotics or vaccines directly linked to Photobacterium andalusiense, its study contributes to the broader understanding of marine microbiomes and their interactions with human health. Continued research is essential to clarify its pathogenic potential and to monitor its presence in seafood products to prevent potential outbreaks.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Photobacterium andalusiense is a marine bacterium commonly found in coastal waters and deep-sea environments. This microorganism thrives in saline conditions, often associated with marine sediments and planktonic communities. Its presence is particularly noted in areas with high organic matter, where it plays a crucial role in the degradation of organic compounds, contributing to nutrient cycling within the ecosystem. In terms of ecological interactions, Photobacterium andalusiense exhibits bioluminescence, which is significant for its survival and interaction with other marine organisms. This bioluminescent property can attract prey or facilitate communication with other bacteria, showcasing its role in symbiotic relationships within the marine biome. Furthermore, this bacterium is often involved in mutualistic associations with various marine species, including fish, where it can provide benefits such as enhanced visibility in dark waters. Its adaptability to varying salinity levels and temperature ranges allows it to thrive in diverse marine habitats, from estuaries to the open ocean, making it a vital component of the marine microbiome.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Photobacterium andalusiense has shown potential in various industrial applications, particularly in the fields of biotechnology and waste management. This organism is known for its ability to produce bioluminescence, which can be harnessed in biotechnological applications such as biosensors and environmental monitoring. The luminescent properties of Photobacterium andalusiense can be utilized to detect pollutants in water, making it a valuable tool in environmental biotechnology. In the realm of waste management, Photobacterium andalusiense has demonstrated capabilities in biodegradation, particularly in the breakdown of organic pollutants. This characteristic can be leveraged in the treatment of wastewater, where the microorganism can help in the degradation of harmful substances, thus contributing to cleaner effluents. Moreover, the enzymatic activities of Photobacterium andalusiense can be explored for biofuel production. The organism's metabolic pathways may be utilized in fermentation processes to convert organic materials into biofuels, providing a sustainable alternative to fossil fuels. This application is particularly relevant in the context of renewable energy sources. In pharmaceutical development, the unique biochemical properties of Photobacterium andalusiense could lead to the discovery of novel compounds with antimicrobial or therapeutic effects. The organism's ability to produce various metabolites may be investigated for potential use in drug formulation. Overall, Photobacterium andalusiense presents a multifaceted opportunity for innovation across several industries, particularly in enhancing sustainability and efficiency in biotechnology, waste management, and energy production.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	google/gemini-pro	anthropic/claude-3-haiku:beta	google/gemini-flash-1.5	mistralai/mixtral-8x7b-instruct:nitro	google/gemini-pro-1.5	meta-llama/llama-3-70b-instruct:nitro	openchat/openchat-7b	mistralai/mistral-7b-instruct	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	openai/gpt-4	openai/gpt-4	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	google/gemma-7b-it	google/gemma-7b-it	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	facultatively anaerobic ✗	N/A	N/A	N/A	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true
Animal pathogenicity	N/A	false	true	true	false	false	true	false	false	true	false	false	false	false	false	false	true	true	true	true	true	true	false	false	true	true	true	true
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	true	true	true	true	true	true	true	false	true	false	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Host association	FALSE	false ✓	true ✗	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	gamma	beta	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	spirillum ✗	spirillum ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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