Rhodococcus gordoniae

General Information

Rhodococcus gordoniae is a fascinating microorganism belonging to the genus Rhodococcus, which is known for its remarkable metabolic diversity and adaptability. One of the key characteristics of R. gordoniae is its ability to degrade a wide range of organic compounds, including pollutants and toxic substances. This makes it particularly valuable in the field of bioremediation, where it can be employed to clean up contaminated environments. Another noteworthy feature of R. gordoniae is its production of bioactive compounds, such as antibiotics and enzymes, which have potential applications in pharmaceuticals and industrial processes. The organism's ability to produce these compounds under various environmental conditions highlights its versatility and potential for biotechnological exploitation. From a research perspective, R. gordoniae is also interesting due to its complex cell wall structure, which includes mycolic acids. These long-chain fatty acids contribute to the organism's resilience and ability to survive in harsh conditions, making it a subject of study for understanding microbial resistance mechanisms. In summary, Rhodococcus gordoniae stands out for its biodegradation capabilities, production of valuable bioactive compounds, and resilience in extreme environments, making it a valuable organism for both environmental and industrial applications.

Rhodococcus gordoniae is a fascinating actinobacterium known for its remarkable metabolic versatility and ability to degrade a wide range of organic compounds, including complex hydrocarbons. This organism is particularly interesting due to its potential applications in bioremediation, where it can be utilized to clean up contaminated environments, such as oil spills and industrial waste sites. Its capacity to break down pollutants makes it a valuable asset in environmental microbiology. One of the unique characteristics of Rhodococcus gordoniae is its ability to utilize various carbon sources, including aromatic compounds, which are often resistant to degradation by other microorganisms. This metabolic flexibility is attributed to its diverse set of enzymes, including those involved in the degradation of polycyclic aromatic hydrocarbons (PAHs). This trait not only highlights its ecological importance but also positions it as a model organism for studying biodegradation pathways. Additionally, Rhodococcus gordoniae has been studied for its potential in the production of valuable bioproducts, such as biosurfactants and enzymes, which can have applications in various industries, including pharmaceuticals and agriculture. The ability to produce these compounds adds to its significance in biotechnology. Furthermore, this species is known for its resilience in harsh environments, which makes it an interesting subject for research into microbial survival strategies and adaptations. Its genetic and metabolic pathways are being explored to enhance its capabilities for biotechnological applications, making Rhodococcus gordoniae a promising candidate for future studies in microbial ecology and applied microbiology.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Mycobacteriales

Family: Nocardiaceae

Genus: Rhodococcus

Species: Rhodococcus gordoniae

NCBI ID

223392

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/362/245/GCF_024362245.1_ASM2436224v1

File for sequence-based predictions:
GCF_024362245.1_ASM2436224v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Rhodococcus gordoniae is a member of the genus Rhodococcus, which is known for its environmental versatility and ability to degrade various organic compounds. Clinically, Rhodococcus gordoniae has been associated with opportunistic infections, particularly in immunocompromised patients. It can cause pulmonary infections, skin infections, and soft tissue infections, often in individuals with underlying health conditions such as chronic lung disease or those undergoing immunosuppressive therapy. One of the notable aspects of Rhodococcus gordoniae is its pathogenicity; it possesses several virulence factors that enable it to evade the immune response of the host. These factors include the ability to survive within macrophages and resist phagocytosis, which complicates treatment and management of infections. In terms of antimicrobial resistance, Rhodococcus gordoniae has shown resistance to multiple antibiotics, including beta-lactams and aminoglycosides, which poses a significant challenge in clinical settings. This resistance is often attributed to the organism's ability to produce enzymes that inactivate these drugs, as well as its inherent genetic traits that confer resistance mechanisms. Despite its pathogenic potential, Rhodococcus gordoniae has also been explored for medical applications, particularly in bioremediation and the production of biotechnologically relevant compounds. Its ability to degrade pollutants makes it a candidate for environmental cleanup efforts. However, its clinical implications as a pathogen necessitate careful monitoring and management in healthcare settings, especially among vulnerable populations.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Rhodococcus gordoniae is a versatile bacterium commonly found in a variety of habitats and environments, particularly those influenced by human activity. This microorganism thrives in soil and sediment environments, often in areas that are rich in organic matter and nutrients. Its ability to degrade a wide range of organic compounds, including hydrocarbons, makes it a key player in bioremediation processes, particularly in contaminated sites such as oil spills or industrial waste areas. In addition to its role in bioremediation, Rhodococcus gordoniae is known for its interactions with other microorganisms, contributing to microbial communities that enhance nutrient cycling and organic matter decomposition. This bacterium can form symbiotic relationships with plants, aiding in nutrient uptake and promoting plant health in agricultural ecosystems. Furthermore, Rhodococcus gordoniae exhibits remarkable environmental adaptability, allowing it to survive in extreme conditions, such as high salinity or varying pH levels. This adaptability not only enables it to thrive in diverse biomes but also positions it as a potential candidate for use in biotechnological applications, including the production of valuable metabolites. Overall, Rhodococcus gordoniae plays a significant role in maintaining the health and functionality of its associated ecosystems, making it an important organism in both natural and anthropogenic environments.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Rhodococcus gordoniae has shown significant potential in various industrial applications, particularly in the fields of biotechnology, waste management, and bioremediation. This organism is known for its ability to degrade a wide range of environmental pollutants, making it a valuable asset in waste treatment processes. For instance, Rhodococcus gordoniae can effectively break down hydrocarbons, which are prevalent in oil spills and industrial waste, thus contributing to environmental cleanup efforts. In the realm of biofuel production, Rhodococcus gordoniae has been studied for its capacity to convert organic materials into usable energy sources through fermentation processes. This capability allows for the transformation of waste biomass into biofuels, promoting sustainable energy solutions. Moreover, the organism is recognized for its enzymatic activity, particularly in the production of enzymes that can be utilized in various industrial processes, including the textile and detergent industries. These enzymes can enhance the efficiency of biodegradation and bioprocessing, leading to more environmentally friendly manufacturing practices. In pharmaceutical development, Rhodococcus gordoniae has been explored for its potential in synthesizing bioactive compounds, which could lead to the discovery of new drugs or therapeutic agents. Its metabolic versatility allows it to participate in complex biochemical pathways, making it a candidate for further research in drug formulation. Overall, Rhodococcus gordoniae exemplifies the diverse applications of microorganisms in modern industry, particularly in enhancing sustainability and efficiency across various sectors.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	google/gemini-flash-1.5	meta-llama/llama-3-70b-instruct:nitro	anthropic/claude-3-haiku:beta	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	mistralai/mixtral-8x7b-instruct:nitro	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	google/gemma-7b-it	google/gemma-7b-it	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct
Motility	FALSE	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓
Aerophilicity	aerobic	N/A	aerobic ✓	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerotolerant ✗	aerotolerant ✗	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	TRUE	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Biosafety level	biosafety level 2	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗
Health association	N/A	true	true	true	true	false	true	true	false	false	true	true	true	true	false	false	true	true	false	false	true	true	true	true	true	true	true	true	false	false
Host association	FALSE	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	bacillus ✓	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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